DY258247

Overview
NameDY258247
Unique NameDY258247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length988
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:1..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.347e-63
Identity = 114/177 (64.41%), Postives = 134/177 (75.71%), Query Frame = 1
Query:  289 FFVKRRSFGVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 819
            F++ R          +  S+Y+ +VKDI+GKDV LSKF GKVLLIVNVAS+CGLT  NY E++ LY KYKTQGFEILAFPCNQFG QEPGSN EIKE  C  FKAEFPIFDK++VNG NT P+Y FLK   GG  GD +KWNF KFLVD+ G V++RY PTTSP +IEKDI KL+ +
Sbjct:   29 FYLYRYPSSPSTVEQSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIEKDIVKLLAS 205          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.265e-62
Identity = 112/153 (73.20%), Postives = 131/153 (85.62%), Query Frame = 1
Query:  355 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            F+ KD+ G+DV LSK+KGKVLLIVNVAS+CG T SNY EL+ LY+KYK QGFEILAFPCNQFGGQEPGSN EI+ FACTRFKAE+P+F KV+VNG    P+Y+FLKSS GGFLGD +KWNF KFLVD+ GKV++RY PTTSP  IEKDI+KL+
Sbjct:   25 FSDKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTTSPLSIEKDIKKLL 177          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.276e-62
Identity = 112/159 (70.44%), Postives = 133/159 (83.65%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  E I+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFLVDK G V++RY PTT+P  +EKDI+KL+
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 167          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.115e-61
Identity = 110/155 (70.97%), Postives = 128/155 (82.58%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQ 804
            KS+YDFTVKDI G DV L ++KGK LL+VNVAS+CGLT +NY EL+ LYEKYK QG EILAFPCNQF GQEPG+N EI++  CTRFKAEFPIFDKVDVNG NTAP+Y++LK+  GG L D +KWNF KFLV  +GKV++RY P TSP Q EKDIQ
Sbjct:    7 KSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLIDAIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEKDIQ 161          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.709e-59
Identity = 106/160 (66.25%), Postives = 132/160 (82.50%), Query Frame = 1
Query:  334 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            ++K+LYDFTVKD  G DV LS +KGKV+LIVNVAS+CGLT ++Y EL+ +Y KYK +GFEILAFPCNQFG QEPG+N EI +F CT+FK+EFPIFDK+DVNG N APVY+FLK+   G LG  ++WNF KFLVDKNG+ ++ Y PTTSP  +E+DIQKL+
Sbjct:    5 SKKTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILGGDIQWNFSKFLVDKNGQPVDCYYPTTSPLTVERDIQKLL 164          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.940e-56
Identity = 101/162 (62.35%), Postives = 128/162 (79.01%), Query Frame = 1
Query:  322 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 807
            +++ +EKS++ FTVKD  GK+V LS ++GKVLL+VNVAS+CG T SNY++L+ LY KYK QGF +LAFPCNQF  QEPG++ E  +FACTRFKAE+P+F KV VNG N APVY+FLKS    FLG  +KWNF KFLV K+G+VI+RY  T SP  I+KDI+K
Sbjct:    6 SSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIEK 167          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.291e-54
Identity = 92/158 (58.23%), Postives = 127/158 (80.38%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +S+Y+ +++D  G ++ LS++K KVLLIVNVAS+CG+T SNY+EL+ LY +YK +G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIF+K++VNG N +P+Y+FLK    G  GD ++WNF KFLVDKNG+ ++RY PTTSP  +E DI+ L+
Sbjct:    7 ESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLEHDIKNLL 164          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 9.084e-53
Identity = 98/162 (60.49%), Postives = 124/162 (76.54%), Query Frame = 1
Query:  322 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 807
            + +  E+S++ FTVKD  GKD+ +S ++GKVLLIVNVAS+CG T +NY++L+ LY KYK Q FEILAFPCNQF  QEPG++ E  EFAC RFKAE+P+F KV VNG N AP+Y+FLK+S   FLG  +KWNF KFLV K+G VI+RY    +P  IEKDI+K
Sbjct:    4 SASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIEKDIKK 165          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.960e-47
Identity = 88/159 (55.35%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA 819
            S++  TVK+  G+D PLS ++GKVL+IVNVAS+CGLT SNY++   L + YK  G E+LAFPCNQFGGQEP    +I  F   +FK E  +F K+DVNG NTAP+Y+FLK   GGFL D +KWNF KFLV ++G VI+R+ PTT P  ++KDI+  + A
Sbjct:    3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIKWNFTKFLVGRDGHVIKRFSPTTEPKDMKKDIEAALQA 161          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 9.728e-47
Identity = 85/155 (54.84%), Postives = 115/155 (74.19%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQK 807
            S+YDF VK+ +G DV LS +KGKVL+IVNVAS+CGLT  NY++L  L + YK  G E+LAFPCNQF GQEP    +I+ F   +FK E  +F K+DVNG   +P+++FLK+  GGF+ D +KWNF KFLV ++GK+I+R+ PTT P  +EKDI++
Sbjct:    3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDIKE 157          
The following BLAST results are available for this feature:
BLAST of DY258247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX3_ARATH4.347e-6364.41Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX4_HELAN1.265e-6273.20Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI6.276e-6270.44Probable phospholipid hydroperoxide glutathione pe... [more]
GPX2_ARATH3.115e-6170.97Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX1_HELAN1.709e-5966.25Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX5_ARATH3.940e-5662.35Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX8_ARATH6.291e-5458.23Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX4_ARATH9.084e-5360.49Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX2_CAEEL1.960e-4755.35Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX1_CAEEL9.728e-4754.84Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DC04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258247 ID=DY258247; Name=DY258247; organism=Citrus clementina; type=EST; length=988bp
AGGGGCTCTTACATTTATATAACACGAAGTACACAACACAACTCTCTGTT
ACTACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCTTATTCGA
TGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACACAAATC
AAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGGACTCC
TACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTTTCTTC
AACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAA
CGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCTTTATA
TGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGT
TTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTG
ACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGAC
TCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAG
AGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAG
GCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGC
TCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTAGGCGACC
TTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAAATGGTAAAGTC
ATCGAGAGATATCCACCAACTACCTCGCCTTTCCAAATTGAGAAGGACAT
CCAGAAGCTTGTTGTGGCATGAATCTTGACTTGAGCTGCTTGGCCATGTC
TCAGATGTATCGACGAGATAGAAACTGAATATATGTATATGTATATTTTC
TGAATCGGCATCACATAGATGAATTTTTTCCTGCCTTCCCCTGAAATGTT
ATAGGTTTTTTAAATCCTAATAATTAAAGATTTTGTCC
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