DY258247

Overview
NameDY258247
Unique NameDY258247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length988
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:1..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.273e-38
Identity = 77/156 (49.36%), Postives = 108/156 (69.23%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            +S+++F+ KDIDG+ V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   39 RSMHEFSAKDIDGRMVNLDKYRGHVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.273e-38
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+ G V++R+ P   P QIE++I+KL+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.273e-38
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+ G V++R+ P   P QIE++I+KL+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: BSAA_STAAR (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MRSA252) GN=bsaA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.273e-38
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+ G V++R+ P   P QIE++I+KL+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: BSAA_STAAN (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain N315) GN=bsaA PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.273e-38
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+ G V++R+ P   P QIE++I+KL+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: BSAA_STAAM (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=bsaA PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.273e-38
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+ G V++R+ P   P QIE++I+KL+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: BSAA_STAAC (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain COL) GN=bsaA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.273e-38
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+ G V++R+ P   P QIE++I+KL+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 6.320e-38
Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 6.320e-38
Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG V++RY P   P  IEKD+
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.078e-37
Identity = 78/156 (50.00%), Postives = 107/156 (68.59%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFLVDKNG V++RY P   P  IEKD+
Sbjct:   39 RSMHEFSAKDIDGHTVNLDKYRGFVCIVTNVASQUGKTQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGTLGNAIKWNFTKFLVDKNGCVVKRYGPMEEPQVIEKDL 193          
The following BLAST results are available for this feature:
BLAST of DY258247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX4_BOVIN1.273e-3849.36Phospholipid hydroperoxide glutathione peroxidase,... [more]
BSAA_STAAW1.273e-3847.47Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAS1.273e-3847.47Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAR1.273e-3847.47Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAN1.273e-3847.47Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAM1.273e-3847.47Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAC1.273e-3847.47Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX4_PONPY6.320e-3849.36Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN6.320e-3849.36Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CALJA1.078e-3750.00Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DC04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258247 ID=DY258247; Name=DY258247; organism=Citrus clementina; type=EST; length=988bp
AGGGGCTCTTACATTTATATAACACGAAGTACACAACACAACTCTCTGTT
ACTACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCTTATTCGA
TGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACACAAATC
AAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGGACTCC
TACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTTTCTTC
AACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAA
CGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCTTTATA
TGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGT
TTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTG
ACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGAC
TCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAG
AGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAG
GCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGC
TCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTAGGCGACC
TTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAAATGGTAAAGTC
ATCGAGAGATATCCACCAACTACCTCGCCTTTCCAAATTGAGAAGGACAT
CCAGAAGCTTGTTGTGGCATGAATCTTGACTTGAGCTGCTTGGCCATGTC
TCAGATGTATCGACGAGATAGAAACTGAATATATGTATATGTATATTTTC
TGAATCGGCATCACATAGATGAATTTTTTCCTGCCTTCCCCTGAAATGTT
ATAGGTTTTTTAAATCCTAATAATTAAAGATTTTGTCC
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