DY258247

Overview
NameDY258247
Unique NameDY258247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length988
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:1..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX42_MOUSE (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Mus musculus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 4.529e-36
Identity = 74/156 (47.44%), Postives = 106/156 (67.95%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F ++ K+ VNG +  P+++++K      G LG+ +KWNF KFL+DKNG  ++RY P   P  IE+D+
Sbjct:   95 RSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCEVKRYGPMEEPQVIERDL 249          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.721e-35
Identity = 73/155 (47.10%), Postives = 103/155 (66.45%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            S+++F+ K +DG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G   LAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL DKNG V++RY P   P  +EKD+
Sbjct:   40 SMHEFSAKVLDGHTVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLFDKNGCVVKRYGPMEEPLVLEKDL 193          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_YEAST (Glutathione peroxidase 1 OS=Saccharomyces cerevisiae GN=GPX1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.457e-34
Identity = 73/159 (45.91%), Postives = 101/159 (63.52%), Query Frame = 1
Query:  340 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            +  Y F+  D +G   P +  + KV+LIVNVAS C  TP  Y EL +LYEKYK+ G  I+AFPC QFG QE   + EI +F   ++   FPI  K+  NG    PVY+FLK+S  G  G  ++KWNFEKF+VD+NGKV++R+   T P ++   I++L+
Sbjct:    2 QEFYSFSPIDENGNPFPFNSLRNKVVLIVNVASHCAFTPQ-YKELEYLYEKYKSHGLVIVAFPCGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSGKSGIKMIKWNFEKFVVDRNGKVVKRFSCMTRPLELCPIIEELL 159          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.903e-34
Identity = 81/169 (47.93%), Postives = 103/169 (60.95%), Query Frame = 1
Query:  313 GVHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR--FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            G   T++T  + +  +  DID K+V       +V+L+VNVAS+ GLT +NY E + L  KY      I+AFPCNQFGGQEPG+N EIK FA  R    A   + DKVDVNG N +PVY FLK +AG      + WNF KFLV  +G V  RY PTT P  +EK I +L+
Sbjct:   33 GSKPTSSTS-NFHQLSALDIDKKNVDFKSLNNRVVLVVNVASKUGLTAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLKVAAGDTSD--IGWNFGKFLVRPDGTVFGRYAPTTGPLSLEKYIVELI 198          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: BSAA_STAEQ (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=bsaA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.781e-32
Identity = 68/157 (43.31%), Postives = 98/157 (62.42%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            S+YD  V++ DG    L ++KGKVL+IVN A+ C L    +++L  LY+KY   G EIL+FPCN F  QEPG   +I      +F   FPI  K++VNG +  P+Y  LK    G  G  +KWNF KF+VD+ G +++R+ P  +P Q+EK I++L+
Sbjct:    2 SIYDIAVENYDGSTYLLKRYKGKVLIIVNTATNCTLN-DQFNKLEMLYKKYHKYGLEILSFPCNDFNNQEPGLIKDIYRVYKYKFGITFPIHAKINVNGEHEHPLYTLLKCKQPGLFGSQIKWNFTKFVVDQQGNIVKRFLPCDNPNQMEKLIRQLL 157          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.182e-32
Identity = 75/168 (44.64%), Postives = 101/168 (60.12%), Query Frame = 1
Query:  337 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA--------GGFLGDLVK------------WNFEKFLVDKNGKVIERYPPTTSP 780
            + S+    VKDIDG+   L KF G VLLIVNVAS+CGLTP  Y +L ++ + +  +GF +L FPCNQF  QEPGS+ EIK +  T +   FP+F K++VNG    P+YQ L ++A         GF   +V             WNFEKFLV ++GKVI+R+ P  +P
Sbjct:    2 QDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTP 168          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX7_MOUSE (Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.773e-31
Identity = 71/169 (42.01%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  322 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLVVA*IL 828
            A A +E+  YDF   +I GK V L K++G V L+VNVAS CG T  NY  L  L        F +LAFPCNQFG QEP +N EI+ FA   +   FP+F K+ V G    P +++L  ++    G    WNF K+LVD +GKV+  + PT    +I+  I + V+  IL
Sbjct:   16 ACAQSEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS----GKEPTWNFWKYLVDPDGKVVGAWDPTVPVAEIKPRITEQVMKLIL 180          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.714e-30
Identity = 71/164 (43.29%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  322 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            A A  E+  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P +++L  ++    G    WNF K+LV  +GKVI  + PT S  +I   I  LV
Sbjct:   16 ACAPREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETS----GKEPTWNFWKYLVAPDGKVIGAWDPTVSVEEIRPQITALV 175          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX7_HUMAN (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.335e-30
Identity = 69/164 (42.07%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  322 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            A A  E+  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P +++L  ++    G    WNF K+LV  +GKV+  + PT S  ++   I  LV
Sbjct:   17 ACAQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 176          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX8B_XENLA (Probable glutathione peroxidase 8-B OS=Xenopus laevis GN=gpx8-B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.744e-28
Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  349 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            Y + V D  G+ V LSK++GK  L+VNVAS C  T +NY  L  L+ ++    F +LAFPCNQFG  EPG+N EI+  A   +   FP+F K+ + G    P Y+FL  S         +WNF K+LVD  G+V++ + P  +   I  ++  LV
Sbjct:   48 YSYEVTDAKGRTVALSKYRGKASLVVNVASGCPHTEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNKEIEAMAKRNYGVTFPVFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVDPQGQVVKYWRPDETAESIRPEVASLV 198          
The following BLAST results are available for this feature:
BLAST of DY258247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX42_MOUSE4.529e-3647.44Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HYLLA1.721e-3547.10Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_YEAST1.457e-3445.91Glutathione peroxidase 1 OS=Saccharomyces cerevisi... [more]
GPX1_CHLRE1.903e-3447.93Glutathione peroxidase 1, mitochondrial OS=Chlamyd... [more]
BSAA_STAEQ1.781e-3243.31Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BTUE_ECOLI5.182e-3244.64Vitamin B12 transport periplasmic protein btuE OS=... [more]
GPX7_MOUSE9.773e-3142.01Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 P... [more]
GPX7_BOVIN3.714e-3043.29Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]
GPX7_HUMAN6.335e-3042.07Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]
GPX8B_XENLA7.744e-2840.00Probable glutathione peroxidase 8-B OS=Xenopus lae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DC04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258247 ID=DY258247; Name=DY258247; organism=Citrus clementina; type=EST; length=988bp
AGGGGCTCTTACATTTATATAACACGAAGTACACAACACAACTCTCTGTT
ACTACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCTTATTCGA
TGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACACAAATC
AAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGGACTCC
TACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTTTCTTC
AACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAA
CGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCTTTATA
TGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGT
TTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTG
ACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGAC
TCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAG
AGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAG
GCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGC
TCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTAGGCGACC
TTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAAATGGTAAAGTC
ATCGAGAGATATCCACCAACTACCTCGCCTTTCCAAATTGAGAAGGACAT
CCAGAAGCTTGTTGTGGCATGAATCTTGACTTGAGCTGCTTGGCCATGTC
TCAGATGTATCGACGAGATAGAAACTGAATATATGTATATGTATATTTTC
TGAATCGGCATCACATAGATGAATTTTTTCCTGCCTTCCCCTGAAATGTT
ATAGGTTTTTTAAATCCTAATAATTAAAGATTTTGTCC
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