DY258247

Overview
NameDY258247
Unique NameDY258247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length988
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:1..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX5_MOUSE (Epididymal secretory glutathione peroxidase OS=Mus musculus GN=Gpx5 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.169e-21
Identity = 67/174 (38.51%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  343 SLYDFTVKDIDGK-DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLV---------------KWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            ++YD+    ++GK D+P  +++GK +L VNVA+ CGLT   Y EL+ L E  K  G  IL FPCNQFG QEPG N EI       R    F   F +F K DVNG N   ++ FLK S       +V               +WNFEKFLV  +G  + R+        ++ DI
Sbjct:   39 TIYDYEALSLNGKEDIPFKQYRGKHVLFVNVATYCGLT-IQYPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSETVVMSKHTSWEPIKVHDIRWNFEKFLVGPDGVPVMRWFHQAPVSTVKSDI 211          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX3_PONPY (Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 1.197e-20
Identity = 68/174 (39.08%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  I R+   T+   ++ DI
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX3_HUMAN (Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.197e-20
Identity = 68/174 (39.08%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  I R+   T+   ++ DI
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.043e-20
Identity = 65/174 (37.36%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            ++YD+    ++  + VP  ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG     V+ FLK S       LG              ++WNFEKFLV  +G  + R+    +   ++ DI
Sbjct:   39 TIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 211          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_BOVIN (Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 2.043e-20
Identity = 65/189 (34.39%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  328 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLK-------SSAGGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            AA  +++Y F+ + +  G+   LS  +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI    C +       F+  F +F+K +VNG    P++ FL+         A   + D             V WNFEKFLV  +G  + RY        IE DI+ L+
Sbjct:   13 AAAPRTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIETLL 199          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.484e-20
Identity = 66/174 (37.93%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            ++Y++    IDG++  P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G ++L FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  + R+   T+   ++ DI
Sbjct:   39 TIYEYGALTIDGEEYTPFKQYIGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDI 211          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_RABIT (Glutathione peroxidase 1 OS=Oryctolagus cuniculus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.484e-20
Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  328 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            AA  +S+Y F+   +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L E+   +   +L FPCNQFG QE   N EI       R    F+  F +F K +VNG   +P++ FL+ +      D                    V W+FEKFLV  +G  + RY        IE DIQ L+
Sbjct:    7 AAAAQSVYSFSAHPLAGGEPVNLGSLRGKVLLIENVASLUGTTVRDYTQMNELQERLGPRALVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFQKCEVNGAKASPLFAFLREALPPPSDDPTALMTDPKFITWCPVCRNDVSWSFEKFLVGPDGVPVRRYSRRFPTIDIEPDIQALL 193          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX5_PIG (Epididymal secretory glutathione peroxidase OS=Sus scrofa GN=GPX5 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.550e-20
Identity = 64/174 (36.78%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAG------GFLGDL---------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            ++YD+    ++G + +   ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI       R    +   F +F+K DVNG     V+ FLK S        G +G +         ++WNFEKFLV  +G  + R+   T    ++ DI
Sbjct:   37 TIYDYDAFTLNGNEHIQFKQYAGKHVLFVNVATYCGLT-AQYPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEILLGLKYVRPGGGYVPNFQLFEKGDVNGEKEQKVFTFLKHSCPHPSELIGSIGYISWEPIRVHDIRWNFEKFLVGPDGVPVMRWVHETPISTVKSDI 209          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX3_MACFU (Glutathione peroxidase 3 OS=Macaca fuscata fuscata GN=GPX3 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.550e-20
Identity = 66/174 (37.93%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  343 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDI 801
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S       LG              ++WNFEKFLV  +G  + R+   T+   ++ DI
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYIGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDI 211          
BLAST of DY258247 vs. ExPASy Swiss-Prot
Match: GPX1_PANTR (Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.550e-20
Identity = 64/187 (34.22%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  328 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLVDKNGKVIERYPPTTSPFQIEKDIQKLV 813
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG     ++ FL+ +      D                    V WNFEKFLV  +G  + RY        IE DI+ L+
Sbjct:    8 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHTLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
The following BLAST results are available for this feature:
BLAST of DY258247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX5_MOUSE9.169e-2138.51Epididymal secretory glutathione peroxidase OS=Mus... [more]
GPX3_PONPY1.197e-2039.08Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3... [more]
GPX3_HUMAN1.197e-2039.08Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 P... [more]
GPX5_MACFA2.043e-2037.36Epididymal secretory glutathione peroxidase OS=Mac... [more]
GPX1_BOVIN2.043e-2034.39Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=... [more]
GPX3_CEBAP3.484e-2037.93Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]
GPX1_RABIT3.484e-2034.76Glutathione peroxidase 1 OS=Oryctolagus cuniculus ... [more]
GPX5_PIG4.550e-2036.78Epididymal secretory glutathione peroxidase OS=Sus... [more]
GPX3_MACFU4.550e-2037.93Glutathione peroxidase 3 OS=Macaca fuscata fuscata... [more]
GPX1_PANTR4.550e-2034.22Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DC04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258247 ID=DY258247; Name=DY258247; organism=Citrus clementina; type=EST; length=988bp
AGGGGCTCTTACATTTATATAACACGAAGTACACAACACAACTCTCTGTT
ACTACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCTTATTCGA
TGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCACACAAATC
AAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCATGGACTCC
TACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGCTTTCTTC
AACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAA
CGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTGAGAAGTCTTTATA
TGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGT
TTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTG
ACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGAC
TCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAG
AGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAG
GCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGC
TCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTAGGCGACC
TTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAAATGGTAAAGTC
ATCGAGAGATATCCACCAACTACCTCGCCTTTCCAAATTGAGAAGGACAT
CCAGAAGCTTGTTGTGGCATGAATCTTGACTTGAGCTGCTTGGCCATGTC
TCAGATGTATCGACGAGATAGAAACTGAATATATGTATATGTATATTTTC
TGAATCGGCATCACATAGATGAATTTTTTCCTGCCTTCCCCTGAAATGTT
ATAGGTTTTTTAAATCCTAATAATTAAAGATTTTGTCC
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