DY258252

Overview
NameDY258252
Unique NameDY258252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10106 contig Ccv1_Contig10106:4..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PPSG       DN+ +W   + G   T + + T++L + F E+YP + PQV F+     HP+VY++G +CLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEM-FHPNVYASGELCLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 3
Query:  180 QSRETSMSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            Q +     G  ++   A    +  R+QKELAE  ++PP         DN+  W   + G PG++Y    + L + F   YP + P+V F      H ++ S G ICLDIL D+WSPA+T+
Sbjct:   35 QVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTF-RTRIYHCNINSQGVICLDILKDNWSPALTI 153          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.442e-12
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 3
Query:  180 QSRETSMSGSSTTTRKALSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            Q +     G  ++   A    +  R+QKELAE  ++PP         DN+  W   + G PG++Y    + L + F   YP + P+V F      H ++ S G ICLDIL D+WSPA+T+
Sbjct:   35 QVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTF-RTRIYHCNINSQGVICLDILKDNWSPALTI 153          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.189e-12
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+ +ELA+   +PPS        D+L  W   + G   + YA   + L + FP  YP + P+V F      HP++ SNG ICLDIL D WSPA+T+
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFT-TRIYHPNINSNGSICLDILRDQWSPALTI 99          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.189e-12
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  210 STTTRKALSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            S +    L   +  R+QKELA+  ++PP         DN+  W   + G PG++Y    + L + F   YP + P+V F      H ++ S G ICLDIL D+WSPA+T+
Sbjct:   37 SMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTF-RTRIYHCNINSQGVICLDILKDNWSPALTI 145          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.189e-12
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  210 STTTRKALSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            S +    L   +  R+QKELA+  ++PP         DN+  W   + G PG++Y    + L + F   YP + P+V F      H ++ S G ICLDIL D+WSPA+T+
Sbjct:   37 SMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTF-RTRIYHCNINSQGVICLDILKDNWSPALTI 145          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.439e-12
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP+G     ++N +  W   + G  GT + + T++L +EF E YP + P V F+     HP+VY++G ICLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKM-FHPNVYADGSICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.439e-12
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP+G     ++N +  W   + G  GT + + T++L +EF E YP + P V F+     HP+VY++G ICLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKM-FHPNVYADGSICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 7.104e-12
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP+G     TDN +  W   + G   T + + T++L +EF E YP + P V F+     HP+VY++G ICLDIL + WSP   V
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVS-KVFHPNVYADGGICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.104e-12
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGF------KHKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPL-HPHVYSNGHICLDILYD--SWSPAMTV 536
            +S +   RLQ+E  +W+ + P GF      K   + +LQ+W   + G  GT +A   Y + VE+P  YP + P+V F  P+   HP+VY +G ICL IL +   W PA+T+
Sbjct:    1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF--PAGFYHPNVYPSGTICLSILNEDQDWRPAITL 109          
The following BLAST results are available for this feature:
BLAST of DY258252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
UBC2_CANAL2.442e-1236.89Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UB2E2_MOUSE2.442e-1234.17Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN2.442e-1234.17Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC4_SCHPO3.189e-1239.00Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UB2E1_MOUSE3.189e-1235.45Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN3.189e-1235.45Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBE2A_MOUSE5.439e-1236.89Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN5.439e-1236.89Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBCD6_DROME7.104e-1237.86Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC9_YEAST7.104e-1236.94SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258252 ID=DY258252; Name=DY258252; organism=Citrus clementina; type=EST; length=1124bp
GGAGATATGGCTTTGGGGAACGCATGAAGCATTAGAGTGAAGGCGGATTG
GGAGTTTTGTTTGTCGTTTTTTTCTCTTTCTTCTTCGTCAAACCCGAACC
CGAACCCGAACCCGTTGATTTCAATTCAGCAAAACTACAAACTTGATCTA
CCATTCATCTCTGCTCGAATATCGATTTTCAATCTCGAGAAACAAGCATG
TCTGGCTCGTCCACCACCACTCGCAAGGCTCTGAGTAAGATTGCTTGCAA
TCGCCTTCAGAAAGAGCTTGCGGAGTGGCAGGTCAACCCACCTTCTGGTT
TCAAACATAAGGCCACCGATAATCTCCAAAGGTGGGTTATTGAAGTAAAT
GGAGCTCCAGGGACCCTCTACGCTAATGAAACCTACCAACTTCAGGTTGA
GTTTCCCGAACGTTACCCCATGGAGGCCCCTCAGGTCATTTTTCTTCATC
CCTCTCCTCTTCATCCTCACGTTTACAGCAATGGTCATATTTGCTTAGAT
ATCCTGTACGATTCATGGTCCCCAGCAATGACCGTTAGTTCCATTTGTAT
CAGTATTCTCTCCATGCTATCAAGCTCCACTGTAAAGCAACGTCCTGAAG
ATAACGACCGCTATGTGAAGAACTGCAGAAATGGCCGATCTCCTAAGGAG
ACTAGGTGGTGGTTCCATGATGATAAAGTGTAATAAGCAAATTATCCTTT
CTCATCAATCAGTTTAAATAATTAGTGTAGGTGGCTTCCTATTTTAAAGG
AAATGAAAGCAGAAGAGTAAAAGTCTAAAGAAGCATTCTGTAAATGTTTT
TTGGGCTCTTTGCTTAAATAACTCCTGTAAATGGCAATGCCTGGTATCTG
CAAAGAGTTACTTCTCTGTTTTTAGCGGTGTGGGAGGATCAAACTTCATC
ACGTCTTTGTGATAAACCCCCGGCGAGATGTACTTGGGACCTTGGGAGAT
TGAATTTGAAATCCTCCCGGAATATTCTTAAAAATCTGGAAAGTGGCGGT
CCGGAGATTTCCCAGGGAAAACCTTTGCTCCAAACCAACCAAAAAAGTTA
CTTTTTTTATTTTTAATTTTTTCTTTTTCCCAAAAGTCCCAAGGGTTTAA
AAAAACCTTTTTGGGTTGGCTTTA
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