DY258252

Overview
NameDY258252
Unique NameDY258252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10106 contig Ccv1_Contig10106:4..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.104e-12
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+ KEL + Q +PP       T D++ +W   + G   + +A   + + + FP  YP + P+V F      HP++ SNG ICLDIL + WSPA+TV
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAF-RTKVYHPNINSNGSICLDILKEQWSPALTV 99          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 7.104e-12
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHK-ATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP+G      +DN+  W   + G   T + + T++L + F E+YP + P V F+  +  HP+VY+NG +CLDIL + WSP   V
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVS-TMFHPNVYANGELCLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 7.104e-12
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKATDN-LQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSP 524
            +S  A  RL ++    Q +PP+G      +N +  W   + G   +++   T++L ++F E YP +AP V FL     HP+VY++G ICLDIL + WSP
Sbjct:    1 MSTAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKM-FHPNVYADGSICLDILQNQWSP 98          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.278e-12
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            R+ KEL++ + +PP+        D+L  W   + G   + YA   + L + FP  YP + P++ F      HP++ +NG+ICLDIL D WSPA+T+
Sbjct:    6 RIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFT-TKIYHPNINANGNICLDILKDQWSPALTL 100          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.278e-12
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKH-KATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+ KEL + Q +PP+        +++  W   + G   + YA   + + + FP  YP + P+V F      HP++ SNG ICLDIL + WSPA+T+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTI 99          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.278e-12
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            RL ++  + Q +PP+G     T DN+  W   + G   T + + T++L +EF E YP + P V F+     HP+VY++G ICLDIL + WSP   V
Sbjct:    8 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKM-FHPNVYADGSICLDILQNRWSPTYDV 102          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.278e-12
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:  240 IACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +A  R+QKEL + Q +PP+        D+L  W   + G   + Y    + L + FP  YP + P+V F      HP++ SNG ICLDIL   WSPA+TV
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT-TKIYHPNINSNGSICLDILRSQWSPALTV 99          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.212e-11
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  252 RLQKELAEWQVNPPSGFK-HKATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            RLQ EL    + P  G       DN+  W+  + GA  T+Y    +++ ++FP  YP + P V F      HP+V +NG+ICLDIL D WSP   V
Sbjct:   10 RLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKF-ETQCFHPNVDNNGNICLDILKDKWSPVYNV 104          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.212e-11
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKH--KATDNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILY-------------DSWSPAMTV 536
            +SK A  RL KEL +   + P G     K+ +N+  W   + G P T YA+  +  ++EFP+ YP+  P++ F  PS LHP++Y NG +C+ IL+             + WSP  +V
Sbjct:    1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFT-PSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSV 116          
BLAST of DY258252 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.583e-11
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 3
Query:  231 LSKIACNRLQKELAEWQVNPPSGFKHKAT-DNLQRWVIEVNGAPGTLYANETYQLQVEFPERYPMEAPQVIFLHPSPLHPHVYSNGHICLDILYDSWSPAMTV 536
            +S  A  RL ++    Q +PP+G       DN+  W   + G   T + + T++L + F E+YP + P V F+     HP+VY+ G +CLDIL + WSP   V
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEM-FHPNVYATGELCLDILQNRWSPTYDV 102          
The following BLAST results are available for this feature:
BLAST of DY258252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
UBC30_ARATH7.104e-1237.00Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC2_SCHPO7.104e-1235.92Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_DICDI7.104e-1236.36Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC4_YEAST9.278e-1236.46Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC4_SOLLC9.278e-1235.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC1_CAEEL9.278e-1238.54Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UB2D4_HUMAN9.278e-1239.00Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBE2C_DICDI1.212e-1138.54Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC7_YEAST1.212e-1134.19Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC2_NEUCR1.583e-1134.95Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258252 ID=DY258252; Name=DY258252; organism=Citrus clementina; type=EST; length=1124bp
GGAGATATGGCTTTGGGGAACGCATGAAGCATTAGAGTGAAGGCGGATTG
GGAGTTTTGTTTGTCGTTTTTTTCTCTTTCTTCTTCGTCAAACCCGAACC
CGAACCCGAACCCGTTGATTTCAATTCAGCAAAACTACAAACTTGATCTA
CCATTCATCTCTGCTCGAATATCGATTTTCAATCTCGAGAAACAAGCATG
TCTGGCTCGTCCACCACCACTCGCAAGGCTCTGAGTAAGATTGCTTGCAA
TCGCCTTCAGAAAGAGCTTGCGGAGTGGCAGGTCAACCCACCTTCTGGTT
TCAAACATAAGGCCACCGATAATCTCCAAAGGTGGGTTATTGAAGTAAAT
GGAGCTCCAGGGACCCTCTACGCTAATGAAACCTACCAACTTCAGGTTGA
GTTTCCCGAACGTTACCCCATGGAGGCCCCTCAGGTCATTTTTCTTCATC
CCTCTCCTCTTCATCCTCACGTTTACAGCAATGGTCATATTTGCTTAGAT
ATCCTGTACGATTCATGGTCCCCAGCAATGACCGTTAGTTCCATTTGTAT
CAGTATTCTCTCCATGCTATCAAGCTCCACTGTAAAGCAACGTCCTGAAG
ATAACGACCGCTATGTGAAGAACTGCAGAAATGGCCGATCTCCTAAGGAG
ACTAGGTGGTGGTTCCATGATGATAAAGTGTAATAAGCAAATTATCCTTT
CTCATCAATCAGTTTAAATAATTAGTGTAGGTGGCTTCCTATTTTAAAGG
AAATGAAAGCAGAAGAGTAAAAGTCTAAAGAAGCATTCTGTAAATGTTTT
TTGGGCTCTTTGCTTAAATAACTCCTGTAAATGGCAATGCCTGGTATCTG
CAAAGAGTTACTTCTCTGTTTTTAGCGGTGTGGGAGGATCAAACTTCATC
ACGTCTTTGTGATAAACCCCCGGCGAGATGTACTTGGGACCTTGGGAGAT
TGAATTTGAAATCCTCCCGGAATATTCTTAAAAATCTGGAAAGTGGCGGT
CCGGAGATTTCCCAGGGAAAACCTTTGCTCCAAACCAACCAAAAAAGTTA
CTTTTTTTATTTTTAATTTTTTCTTTTTCCCAAAAGTCCCAAGGGTTTAA
AAAAACCTTTTTGGGTTGGCTTTA
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