DY258255

Overview
NameDY258255
Unique NameDY258255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258255_ssr2 microsatellite DY258255_ssr2:2..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9851 contig Ccv1_Contig9851:4..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:  106 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI---DSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKE 471
            EVAK+N +D  W +I   VY+VT FL +HPGG+EVL+    KDAT+ FEDVGHS  AREMM++Y +GE+   + S+VP K +  P        E++   + ++ F++  L+  + + F + +K +
Sbjct:   13 EVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVAEERSNVPEKSE--PTWNTEQKTEESSMKSWLMPFVLG-LVATLIYKFFFGTKSQ 134          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 43/121 (35.54%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   82 MAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAF 444
            M KV+ +QEVA+HN  ++ W++I  KVY+V+ F ++HPGGDE+++    +DAT+ F D+GHSD A  +++  +IG++D +S           + V++ E+    +  L  ++ +L+LG+A+
Sbjct:    1 MPKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTSERVS------VEKVSTSENQSKGSGTLVVILAILMLGVAY 115          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  103 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPML-ILGIAFAFRYF 459
            +EVAK N+ ++ W+VI G+VY++T FL +HPGG+EVLL     DAT+ FEDVGHS  AREM+++Y+IG++  S +  K     P       ++    +    + VP++  + I F +R+F
Sbjct:   26 EEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPSDLKPKGDDKDPS------KNNSCQSSWAYWFVPIVGAILIGFLYRHF 139          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 50/124 (40.32%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  103 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKEE 474
            +EVAK N+  + WLVI G+VY+VT FL +HPGG+EVLL     DA++ FEDVGHS  AREM+++Y+IG+I  S +  +     P     S  DT  +      L  +  + + F +RY++ + +
Sbjct:   26 EEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKPENGSKDP-----SKNDTCKSCWAYWILPIIGAVLLGFLYRYYTPESK 144          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 50/124 (40.32%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  103 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKEE 474
            +EVAK N+  + WLVI G+VY+VT FL +HPGG+EVLL     DA++ FEDVGHS  AREM+++Y+IG+I  S +  +     P     S  DT  +      L  +  + + F +RY++ + +
Sbjct:   26 EEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKPESGSKDP-----SKNDTCKSCWAYWILPIIGAVLLGFLYRYYTSESK 144          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 44/126 (34.92%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   91 VHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGI---AFAFRYF 459
            ++  +EVA+H   DD W++++GKVYN++ ++++HPGG+EV+L     DAT+ F+D+GHSD A E++EK +IG +  + +   +      Q+ ++ ED+G     + F  P++ +G+   AF   Y+
Sbjct:   10 IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNLKGAKIVEAKH----AQSFSTEEDSG-----INF--PLIAVGVFLAAFGVYYY 124          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  103 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPML-ILGIAFAFRYF 459
            +EVAK N  ++ W+VI G+VY++T FL +HPGG+EVLL     DAT+ FEDVGHS  AREM+++Y+IG++  + +  K     P       ++    +    ++VP++  + I F +R+F
Sbjct:   26 EEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKPKDGDKDPS------KNNSCQSSWAYWIVPIVGAILIGFLYRHF 139          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  103 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI----DSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKK 468
            +EV KHN RDD ++V+  KVY+++ FL+ HPGG+EVL+    +DA+  FEDVGHS+ A+E++EK++IG +    D   +P     T    A  S  D+    K   +L  ++++   FAFR +  K
Sbjct:    9 EEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNLLRTEDGPQLP-----TTGAAAGGSGYDSSQPVKPAMWLFVLVMVVAYFAFRKYVLK 129          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 47/118 (39.83%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   82 MAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILG 435
            M+    +Q+VA+HN + D ++VI  KVY++T F+++HPGG+EVLL    +D+T+ FEDVGHSD ARE +E   +G +   +   K K  P   ++     TG+A  +   L  +L+LG
Sbjct:    1 MSAEFTYQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTLKRQAGDPKPK-APLPSSLAPAAQTGTATGLGIGLYAVLVLG 117          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   82 MAKVHDFQ--EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI--DSSSVPAKR---KYTPPQQAVNSPEDTGSAAKILQFLV 417
            MA++  F   ++++H  +D  +L I GKVY+ T F+++HPGG+EVL+    +DAT+ FEDVGHSD AR++M K  +GE   DSS  P  +     TP       P D+GS   +L   V
Sbjct:    1 MAELKSFTLADLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSSEKPKAKSPSSSTPRPIPAAEPSDSGSLQYVLALAV 119          
The following BLAST results are available for this feature:
BLAST of DY258255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CYB5_MUSDO9.540e-2040.00Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5_YEAST1.627e-1935.54Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5B_MOUSE1.627e-1940.00Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]
CYB5B_PONAB2.125e-1940.32Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_HUMAN2.125e-1940.32Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]
CYB5_CANTR3.625e-1934.92Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]
CYB5B_RAT3.625e-1939.17Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB52_SCHPO1.378e-1838.89Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_NEUCR5.235e-1839.83Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]
CYB5_MORAP5.235e-1841.18Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DD08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258255 ID=DY258255; Name=DY258255; organism=Citrus clementina; type=EST; length=684bp
GGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATAATTCTGATTCTG
CGTGAGCAGTAGCTGAAATAGCCAGAAAAGAATGGCCAAAGTTCATGATT
TTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTAATT
TCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGGTGG
TGATGAAGTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACTTTG
AAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATACCAC
ATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACACTCC
ACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAAAGA
TTCTACAGTTCCTGGTACCGATGTTGATCCTGGGCATAGCATTTGCTTTC
CGTTACTTTTCCAAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAAACC
GAACCAGATACCTCTTCGTTAGTTTACTACCTATCCTATAGTATTAGAAC
TTCAATTGGCACTTGGTATCAGGATTTGTTTTGATACTAAACTATGTGTA
GCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAAAAG
TTATACTGAAGCAATAATACAGTGAAATTGAACG
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