DY258255

Overview
NameDY258255
Unique NameDY258255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258255_ssr2 microsatellite DY258255_ssr2:2..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9851 contig Ccv1_Contig9851:4..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   85 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPM 423
            +K +   EV +HNN D  W+++ G VY+ T FL+DHPGG + +L     D T++FE + HSD A++M+E Y IGE+ ++   +    + P  +V+   DT     I + + PM
Sbjct:  513 SKTYTMSEVRRHNNADSAWIIVHGHVYDWTRFLKDHPGGTDRILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGELTTTCYNSDSSSSNP--SVHGRSDTIPLTPIKEVITPM 622          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 42/128 (32.81%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   88 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKE 471
            K +  +E+ KH +    W+++  KVY++T FLE+HPGG+EVL      DAT++FEDVGHS  ARE+ + Y IGE+       + K   P + + +  ++ S+      +  +  L +A  +R +  ++
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDD---RSKIAKPSETLITTVESNSSWWTNWVIPAISALVVALMYRLYMAED 134          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   85 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 312
            AK++   EV KHN+ D CW+++ G +Y+ T FL DHPGG + +L     D T++FE + HSD A++M+E Y IGE+
Sbjct:  542 AKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 616          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   88 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 312
            K +   EV +HNNRD  W++++G VY+ T FL+DHPGG++ +L     D T++FE + HSD A++M+E Y IGE+
Sbjct:  516 KSYSLSEVRRHNNRDSAWIIVNGHVYDCTRFLKDHPGGEDSILLNAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 589          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   85 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPM 423
            +K++   EV KHN  D  W+V+ G VYN T FL+DHPGG + +L     D T++F+ + HSD A+ ++E + IGE+ S+       YT    +  +    GS    L  L P+
Sbjct:  551 SKMYSMSEVKKHNTADSAWIVVHGNVYNATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKRLLEDFRIGELISTG------YTSDSSSPGNSVHGGSVYSGLAGLAPI 656          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 40/119 (33.61%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   88 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAF 444
            K  + +E+ +HNN  D ++VI+GKVY+V+ F +DHPGG +++L    +DAT  ++D+GHS +A E++E+ +IG++   +    ++   P+   N   DT     ++  +V   I  I F
Sbjct:    4 KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGTEERLKELKKPRSFDN---DTPPLPLLIALIVLPAIAVIVF 119          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   88 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 312
            K++   EV KHN+ D  W+++ G VY+ T FL+DHPGG + +L     D T++FE + HSD A++M+E Y +GE+
Sbjct:  522 KMYSLSEVKKHNSPDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAI-HSDKAKKMLEDYRVGEL 595          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   85 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVP 420
            +K++   EV KHN  D  W+++ G +Y+ T FL+DHPGG + +L     D T++FE + HSD A++++E Y IGE+ ++   +      P  +V+   + G     ++ L P
Sbjct:  545 SKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGELITTGYDSS-----PNVSVHGASNFGPLLAPIKELTP 650          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: NIA_NEUCR (Nitrate reductase [NADPH] OS=Neurospora crassa GN=nit-3 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   76 KRMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSP 375
            +++ ++   +E+ +H+  ++ W V++G+VYN TPFLE HPGG   +  A  +D TD+F  + HS++A+ MM  YHIG +  S+  A +  +    A++ P
Sbjct:  614 EKVTRLITLEELRQHDGEEEPWFVVNGQVYNGTPFLEGHPGGAASITGAAGQDVTDEFLAI-HSENAKAMMPTYHIGTLTPSAPAALKSSSTSDPALSDP 712          
BLAST of DY258255 vs. ExPASy Swiss-Prot
Match: NIA_EMENI (Nitrate reductase [NADPH] OS=Emericella nidulans GN=niaD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 34/87 (39.08%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   82 MAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRK 342
            + ++ D +E  K+++ +  W V++G+VY+ T FLE HPGG + +++A   DA+++F ++ HS++A++MM  YHIG +D +S+ A RK
Sbjct:  511 VTRIIDLEEFKKNSSDERPWFVVNGEVYDGTAFLEGHPGGAQSIISAAGTDASEEFLEI-HSETAKKMMPDYHIGTLDKASLEALRK 596          
The following BLAST results are available for this feature:
BLAST of DY258255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NIA1_SOYBN6.399e-1636.28Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
CYB5_RAT6.399e-1632.81Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
NIA2_ARATH8.357e-1646.05Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA1_PHAVU8.357e-1646.67Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NIA_SPIOL5.417e-1536.28Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
CYB51_SCHPO1.576e-1433.61Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
NIA_LOTJA2.688e-1444.00Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA1_ARATH2.688e-1433.04Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
NIA_NEUCR4.586e-1435.00Nitrate reductase [NADPH] OS=Neurospora crassa GN=... [more]
NIA_EMENI4.586e-1439.08Nitrate reductase [NADPH] OS=Emericella nidulans G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DD08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258255 ID=DY258255; Name=DY258255; organism=Citrus clementina; type=EST; length=684bp
GGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATAATTCTGATTCTG
CGTGAGCAGTAGCTGAAATAGCCAGAAAAGAATGGCCAAAGTTCATGATT
TTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTAATT
TCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGGTGG
TGATGAAGTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACTTTG
AAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATACCAC
ATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACACTCC
ACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAAAGA
TTCTACAGTTCCTGGTACCGATGTTGATCCTGGGCATAGCATTTGCTTTC
CGTTACTTTTCCAAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAAACC
GAACCAGATACCTCTTCGTTAGTTTACTACCTATCCTATAGTATTAGAAC
TTCAATTGGCACTTGGTATCAGGATTTGTTTTGATACTAAACTATGTGTA
GCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAAAAG
TTATACTGAAGCAATAATACAGTGAAATTGAACG
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