DY258266

Overview
NameDY258266
Unique NameDY258266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1312
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_RICFE (Elongation factor Tu OS=Rickettsia felis GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 90/268 (33.58%), Postives = 136/268 (50.75%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 887
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DK   +P++DV+ I G GTV  GRVE+G++K G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAKATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKLFLMPIEDVFSISGRGTVVTGRVESGIIKLG 240          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSS (Elongation factor Tu OS=Mycobacterium sp. (strain MCS) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 98/264 (37.12%), Postives = 143/264 (54.17%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 878
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W K    L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE GV+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELIELVEMEVRELLAAQDFD-EDAPVVRVSALKALEGDE--------KWVKSVEELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVV 238          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSK (Elongation factor Tu OS=Mycobacterium sp. (strain KMS) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 98/264 (37.12%), Postives = 143/264 (54.17%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 878
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W K    L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE GV+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELIELVEMEVRELLAAQDFD-EDAPVVRVSALKALEGDE--------KWVKSVEELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVV 238          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSJ (Elongation factor Tu OS=Mycobacterium sp. (strain JLS) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 98/264 (37.12%), Postives = 143/264 (54.17%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 878
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W K    L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE GV+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELIELVEMEVRELLAAQDFD-EDAPVVRVSALKALEGDE--------KWVKSVEELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVV 238          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_MYCS2 (Elongation factor Tu OS=Mycobacterium smegmatis GN=tuf PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 98/264 (37.12%), Postives = 144/264 (54.55%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 878
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E+ P V +S     EGD          W K    L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELIELVEMEVRELLAAQDFD-EEAPVVRVSALKALEGDP--------KWVKSVEELMEAVDASIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVI 238          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_LACLS (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 93/263 (35.36%), Postives = 136/263 (51.71%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 887
            + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_LACLM (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 93/263 (35.36%), Postives = 136/263 (51.71%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 887
            + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_LACLA (Elongation factor Tu OS=Lactococcus lactis subsp. lactis GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 93/263 (35.36%), Postives = 136/263 (51.71%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 887
            + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_EIMTE (Elongation factor Tu, apicoplast OS=Eimeria tenella GN=tufA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 92/262 (35.11%), Postives = 133/262 (50.76%), Query Frame = 3
Query:  105 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS-TNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 881
            K KTH+NI  IGHVD GK+T T  +   L  I+    + + +               +D    E+ RGITI+ +  ++ET   +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  +I   NK+D           + +  EV   L    YN +    +  S  +    IE++  N  W K    L++ALD +I EPKR  +KP  L ++D++ I G GTV  G++E G +K
Sbjct:    8 KTKTHLNIGTIGHVDHGKTTLTAAITSYLSKINNTKAKSYSE---------------IDSAPEEKARGITINTSHIEYETNLRHYAHIDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTREHLLLAKQVGVPNIIVFLNKIDMVE---DNELLELVELEVRELLDIYEYNGDSTSIIKGSALKALEYIEKNDLNNKWVKNLKNLIEALDKSIPEPKRDINKPFLLSIEDIFSITGRGTVVTGKIERGKVK 244          
BLAST of DY258266 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.699e-31
Identity = 99/270 (36.67%), Postives = 135/270 (50.00%), Query Frame = 3
Query:   99 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 887
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G+  + VP V  S  +   +     N D  K    LL A D+ I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCDMVD---DEELLELVELEVRELLTSYGFPGDDVPVVRGSALKA--LESDDPNSDACKPIRELLAACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVG 243          
The following BLAST results are available for this feature:
BLAST of DY258266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RICFE1.699e-3133.58Elongation factor Tu OS=Rickettsia felis GN=tuf PE... [more]
EFTU_MYCSS1.699e-3137.12Elongation factor Tu OS=Mycobacterium sp. (strain ... [more]
EFTU_MYCSK1.699e-3137.12Elongation factor Tu OS=Mycobacterium sp. (strain ... [more]
EFTU_MYCSJ1.699e-3137.12Elongation factor Tu OS=Mycobacterium sp. (strain ... [more]
EFTU_MYCS21.699e-3137.12Elongation factor Tu OS=Mycobacterium smegmatis GN... [more]
EFTU_LACLS1.699e-3135.36Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLM1.699e-3135.36Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLA1.699e-3135.36Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_EIMTE1.699e-3135.11Elongation factor Tu, apicoplast OS=Eimeria tenell... [more]
EFTU_DESVV1.699e-3136.67Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DE11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258266 ID=DY258266; Name=DY258266; organism=Citrus clementina; type=EST; length=1312bp
GACTCTTTTACAATACACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAA
CCATTTTCGCGAATATCATTTTAATAAGGTTTTTTCTAGATTTGCCTAAT
GGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACT
CTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATT
GACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAA
GAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTG
AACGTGGTATTACCATTGATATTGCTTTGTGGAAGTTCGAGACCACCAAG
TACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAA
CATGATTACCGGTACCTCACAGGCTGACTGTGCTGTCCTCATCATTGACT
CTACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGT
GAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTG
CTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAGGCTAGGTACG
ATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAAC
CCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACAT
GATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGG
ACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCCCTT
CGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCC
AGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACTT
TTGGCCCCTCTGGATTGACACTGAGGTTAAGTCTGTTGAGATGCACCACA
ACCTCTGCAGGAGGCCCTTTCCGGGTGAAAAGGGTGGCTTTCAAGTGGAG
AAACTTTGCTTGTCAGGGATTCCAAGCGGGGGTTTGGTTGCTTCCCACCC
CAAAGGAAGAATCCACCCGGGGGAAGCTGCCCACTTTTCCCTCCCAGGGT
CATCCTCCTTAAACCCCCCCGGGCCAAAATTGAAAAAGGGAAATGCCCCC
CAGTTTCGTTGACTGGCCCCCCCCTCCCCCCATTTTGCCCCTCAAAGTTT
TTTCTTAAAACCCCCCTGGACAAAAAATTTTTGAAATAGGCCAAAATTCT
CGGCCAAAGGGGAAATCTTTTGGAAAAAAAAAGAACACCCCCACACATTT
TTTTCTTCTTTT
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