DY258276

Overview
NameDY258276
Unique NameDY258276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15531 contig Ccv1_Contig15531:329..1147. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258276 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLMU (6-phosphogluconolactonase OS=Chlamydia muridarum GN=pgl PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 58/212 (27.36%), Postives = 93/212 (43.87%), Query Frame = 2
Query:    2 GSFTVFLSGGPLIDSLRKLLEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQ-MASAEEEFTWFLDKD 634
            G+F V LSGG     + + +        + +K  VFW DER        SNY  A D  L  + I    ++ + D  + +G  E YE  ++      I           FD+++LG+G DGH  SLFPG   L+E ++ V F  + P+    R+T TFP++  + ++   + G  K       L +    D  P++ + +      W L  D
Sbjct:   42 GAFYVALSGGKTPLQIFQEIVKKRAAISDCSKIFVFWGDERASEDTEAGSNYLKAMD-ILKWLRIPDTQIFRM-DTANPKGD-EIYENLIREHVPDTI-----------FDMVMLGVGEDGHTLSLFPGTAALEEKDRLVVF-NEVPQLQTRRMTLTFPIVRQARHLVAYIQGTAKQDLCHKLL-HPLGRDTFPIERVGTPLNPLQWVLSSD 237          
BLAST of DY258276 vs. ExPASy Swiss-Prot
Match: 6PGL_BORBU (6-phosphogluconolactonase OS=Borrelia burgdorferi GN=pgl PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = 2
Query:  101 HVFWVDERVVPKDHDDSNYKLAYDGFLSKVP----ITTGNVYA-INDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQM 592
            H F VDER VP + ++SNY L    F SK+     I+    +A +   +    A  DY   ++  ++ NI           FD +++ +G DGHIASLFP   LL  + +   +  +SPK P +RI+ T   +  S  + ++  G  K  A++  L +N + +  P ++
Sbjct:   58 HFFLVDERCVPLNDENSNYNLLNKNFFSKMVDKNLISISKFHAFVYSEIDEATAIHDYN--IEFNSRFNI-----------FDFIIVSVGEDGHIASLFPSRKLLFSDVEGYQYEYNSPKFPSKRISLTPKSLFGSKAVVLLFMGVDKKCALENFLASNSSINECPARL 213          
BLAST of DY258276 vs. ExPASy Swiss-Prot
Match: 6PGL_RHIME (6-phosphogluconolactonase OS=Rhizobium meliloti GN=pgl PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 56/196 (28.57%), Postives = 90/196 (45.92%), Query Frame = 2
Query:    2 GSFTVFLSGGPLIDSLRKLLEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVT----FIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDL 577
            G+ ++ +SGG    +  + L    +D   W+K  V  VDER VP ++D SN++L  D  L         V     A +AE AA            +     +A+ G P  D+++LGMG DGH AS FPG   L+E     T       ++      R+TFTF  +  + Y+ + + G+GK   +  A  +   +++
Sbjct:   34 GTASLAVSGGSTPKAFFRSLSRRELD---WSKVTVTLVDERFVPPENDRSNHRLVADNLLKDGAAEARFVPLYQAAETAEAAA------------AIASGRTASLGAP-LDVVVLGMGTDGHTASFFPGGTRLEEALDPTTPRGVITMEAEGAGEPRLTFTFSSLQDAGYLVLHIEGSGKKEVLAQAEASGDEAEM 213          
BLAST of DY258276 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLTR (6-phosphogluconolactonase OS=Chlamydia trachomatis GN=pgl PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 60/216 (27.78%), Postives = 94/216 (43.52%), Query Frame = 2
Query:    2 GSFTVFLSGGPLIDSLRKLLEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQ-MASAEEEFTWFLDKDATSK 646
            G+F V LSGG     + + +        + +K  VFW DER        SNY  A D  L  + I    ++ + D    +G  E YE  ++      I           FD+++LG+G DGH  SLFP    L+E E++V F  + P+    R+T TFP++  + ++   V G  K       L +    D  P++ + +      W L  D+  K
Sbjct:   42 GAFYVALSGGKTPLQIFQEIVKKRAAISDCSKIVVFWGDERANEDVEAGSNYLKAMD-ILKGLRIPEDQIFRM-DTADPKGD-EAYEALIQKYVPDAI-----------FDMVMLGVGEDGHTLSLFPETHALEEKERFVVF-NEVPQLHTRRMTLTFPIVRQARHLVAYVQGENKQDLFH-KLVHPLGRDTFPIERVGTPLNPVQWVLSSDSCRK 241          
The following BLAST results are available for this feature:
BLAST of DY258276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
6PGL_CHLMU3.406e-1227.366-phosphogluconolactonase OS=Chlamydia muridarum G... [more]
6PGL_BORBU3.406e-1229.596-phosphogluconolactonase OS=Borrelia burgdorferi ... [more]
6PGL_RHIME1.294e-1128.576-phosphogluconolactonase OS=Rhizobium meliloti GN... [more]
6PGL_CHLTR2.884e-1127.786-phosphogluconolactonase OS=Chlamydia trachomatis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258276 ID=DY258276; Name=DY258276; organism=Citrus clementina; type=EST; length=819bp
GGGCTCCTTCACTGTCTTCTTATCCGGTGGTCCTCTCATCGACTCCCTCA
GGAAATTATTGGAACCCCCGTATGTAGATTCAATTGAATGGGCGAAATGG
CATGTGTTTTGGGTTGATGAAAGAGTTGTTCCCAAGGATCATGATGATAG
CAATTATAAGCTTGCTTATGATGGTTTCCTTTCTAAGGTACCAATTACCA
CTGGCAATGTCTATGCCATCAATGATGCATTATCTGCTGAAGGTGCAGCT
GAAGATTATGAGACTTGTCTCAAGCATTTGACAAAGAGCAATATATTAGC
TACATCTGCTGCTACTGGTTTTCCAAAGTTTGATCTCATGCTTCTGGGTA
TGGGTCCAGATGGACATATAGCTTCTCTGTTTCCAGGGCATCCTCTTCTC
AAGGAGAATGAAAAATGGGTTACTTTCATTAAAGACTCGCCAAAGCCACC
TCCAGAGAGAATCACTTTCACCTTCCCTGTAATCAACTCATCTGCATATA
TTGCAATGGTGGTGTGTGGTGCTGGAAAATCAAGTGCAGTTCAAACTGCA
TTGGGTAATAATCAAAACTCTGATTTGCTGCCAGTTCAAATGGCATCGGC
TGAAGAAGAATTTACTTGGTTTCTTGACAAAGACGCGACTTCAAAGCTGT
AAGAGTCGGAACAATTAGCTGTATGCGTGAATCCCTGTTATCTGCTATGA
TAATTGGTTTGATCTGTGTGGTTTGACTACTAGTACTGCTGGATTTTGTT
AGTAATGAGAAAAGAGTGAACTTGTTAATGCAAGTGAAAAAGATTTGAAT
AAATATAGTTTGATATTTT
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