DY258277

Overview
NameDY258277
Unique NameDY258277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig312 contig Ccv1_Contig312:337..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.704e-25
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL---KLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWV-CDESNRQHQKV 400
            EA  ++ +Y  PIP+   A R+  YV   TLY  ++PFG   I GG D++G  LYM+EPSG  + Y GAA GKGRQ+AK E+EKL       ++ R  V + AKIIY  H++ K+K FELE+SW    E+N  H+ V
Sbjct:   95 EAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFV 231          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.023e-25
Identity = 64/124 (51.61%), Postives = 79/124 (63.71%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVA-KIIYGVHDEAKDKAFELEMSWV 367
            EA  Y   + + IP+K L  RVA YVH  TLY  ++PFG  +IL  +D  +GPQLY IEPSG S+ YF  A GK +Q AKTE+EKLK+   T    ++E A +IIY VHDE KDK F  EM  V
Sbjct:   95 EAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDE--LVESAGEIIYKVHDELKDKDFRFEMGLV 216          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 6.659e-24
Identity = 58/135 (42.96%), Postives = 88/135 (65.19%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 403
            EA  +   Y EP+P++ +A  VA Y+H+ TL    +PFG G     +++  G +L+++EPSG++Y Y   A+GK RQAAK EIEKLK+ E+     V E A+II  V DE KDK  ++EM WV +++N ++++VP
Sbjct:   95 EAMKWLKDYREPMPIQNIANSVAEYIHIHTL-GISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQIEMGWVGEQTNGKYEEVP 228          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 271
            +A  Y  +Y EPIPV +L +  A+ +   T    ++PFG  +++ GYD  GPQLY ++PSG  + +  +A+GK    AKT +EK    +M
Sbjct:   93 QAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 2
Query:    2 EATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 271
            +A  Y  +Y EPIPV +L +  A+ +   T    ++PFG  +++ GYD  GPQLY ++PSG  + +  +A+GK    AKT +EK    +M
Sbjct:   93 QAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182          
BLAST of DY258277 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 2
Query:    8 TFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 253
            T Y+ +Y E  P K L Q +AS +   T    ++PFG  +++ G D  GP LY ++PSG  + +   AIGK   AAKT +EK
Sbjct:   95 TTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEK 176          
The following BLAST results are available for this feature:
BLAST of DY258277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSA3_YEAST2.704e-2545.99Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA3_DROME6.023e-2551.61Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA3_CAEEL6.659e-2442.96Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSA2B_ARATH3.790e-1137.78Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH3.790e-1137.78Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA2_SCHPO6.465e-1140.24Probable proteasome subunit alpha type-2 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DH05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258277 ID=DY258277; Name=DY258277; organism=Citrus clementina; type=EST; length=821bp
TGAAGCTACATTTTATGAAAGTGTATATGGCGAACCAATTCCTGTTAAAG
AACTTGCTCAACGAGTTGCTAGCTATGTGCATCTATGTACTCTATATTGG
TGGCTCAAACCTTTTGGATGTGGTGTAATTCTTGGAGGTTATGACAGAGA
TGGACCGCAATTGTATATGATTGAACCTTCTGGTATCTCCTATAGGTATT
TTGGAGCTGCAATTGGAAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAA
AAGTTGAAGCTTTCTGAAATGACCTGCCGATAAGGGGTCATTGAAGTAGC
CAAGATCATTTATGGAGTGCACGATGAGGCTAAGGACAAGGCCTTTGAAC
TGGAAATGAGCTGGGTCTGTGATGAATCAAACCGCCAGCATCAGAAGGTA
CCAGATGAGCTTCTTGAGGAAGCTAAGGCAGCCGCCAGAGCAGCGTTGGA
AGAGATGGATGCAGATTAGTGTAGCAGAGTTGATAATATTTGTTTACTAG
TTTGATGCCATTTCAGGGCTTGTCTTGGAATACTTGTCGCAACATTTTCA
AAATATTTAATAGATTGGTGGATTCTCTTGATGGTTGATGTCTTTACCGC
TGATAATTGCATCTATACTGTTAAAGTTTTTAAATTATCATTTGCTGGTC
TATGAGCTAGCGCCAAATTTTTTGGTGTTGAAACTTGAATTTATGCTTTT
GCTTAATGTGTTGGCATCTGGTCTAAAATTTAGATAGCACGAAATGTATG
GTTAGGAATGGGAAGAAAGGTTAGTCTGTTTATATCTCTCATTTATTTTT
ATTTTTACCACGTATTTTTAC
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