DY258278

Overview
NameDY258278
Unique NameDY258278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length603
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15270 contig Ccv1_Contig15270:329..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: ZRP4_MAIZE (O-methyltransferase ZRP4 OS=Zea mays GN=ZRP4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 2
Query:    5 GDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALP---AGGKLIACEPVL---PDDSNKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLE 340
            GDMF SIP ADA+ +K VL  W  D+C  I++NC KA+P   AGGK+I    V+   P D  K +  +A+   D+++M I    G  R EQE++++   AG+   R   V    +++E
Sbjct:  250 GDMFESIPPADAVLLKSVLHDWDHDDCVKILKNCKKAIPPREAGGKVIIINMVVGAGPSDM-KHKEMQAIF--DVYIMFI---NGMERDEQEWSKIFSEAGYSDYRIIPVLGVRSIIE 361          
BLAST of DY258278 vs. ExPASy Swiss-Prot
Match: 4OMT_COPJA (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 39/115 (33.91%), Postives = 68/115 (59.13%), Query Frame = 2
Query:    2 GGDMFFSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPA-GGKLIACEPVLPDDS-NKSQRTRALLEGDIFVMTIYRAKGKHRTEQEFNQLGLSAGFPHLRAFYVDYFHTLLE 340
            GGDMF S+P+A AI +K +L  W D++   I++ C  A+P  GGK+I  +  L ++S ++   TR +L+ D+ V T     GK RT++ + ++  SAGF   +  ++    +++E
Sbjct:  237 GGDMFKSVPSAQAIILKLILHDWNDEDSIKILKQCRNAVPKDGGKVIIVDVALDEESDHELSSTRLILDIDMLVNT----GGKERTKEVWEKIVKSAGFSGCKIRHIAAIQSVIE 347          
The following BLAST results are available for this feature:
BLAST of DY258278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ZRP4_MAIZE2.836e-1138.14O-methyltransferase ZRP4 OS=Zea mays GN=ZRP4 PE=2 ... [more]
4OMT_COPJA6.317e-1133.913'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltran... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DH07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258278 ID=DY258278; Name=DY258278; organism=Citrus clementina; type=EST; length=603bp
TGGTGGGGACATGTTTTTTTCCATTCCTGCCGCTGATGCTATCTTTATGA
AGTGGGTTTTAACTACATGGACTGACGATGAATGCAAGCTGATAATGGAG
AACTGTTACAAGGCTCTTCCGGCAGGAGGAAAACTGATTGCTTGTGAGCC
CGTGCTGCCTGATGATTCAAACAAGAGTCAAAGGACGCGTGCTCTCTTAG
AAGGGGACATTTTTGTAATGACCATCTACAGGGCCAAAGGTAAACACAGG
ACTGAACAAGAGTTTAACCAACTTGGTCTCTCTGCTGGTTTTCCACACTT
GAGAGCTTTTTATGTCGATTATTTTCACACTCTTCTTGAGTTCCAAAAGT
AATTTTAGTTTCTGGATCCTTAAAAGACTTGGGGAATATTTGTGATGGAC
TGTGGTTGCCTAGGATGGAATAACTTGCTATGAATTATAAATGTTGAGTA
GGCGGTTAGCGCTAGCTGCCTACCAAAAAAAAAAAAGAAACGATTTATCA
TTAACATAAATTATTGAGCTCATATTTCATAGACATGTATTTTGTATATT
GAGCTCACTCCATTGAACTCATATCTCATAGATATGTATTTCTTTTTCCT
TTG
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