DY258282

Overview
NameDY258282
Unique NameDY258282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1065 contig Ccv1_Contig1065:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYB_TOBAC (Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 36/75 (48.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:    8 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 232
            + +VH+EFRI  P  G+P +L+ DMF+ S+  ++EGLGL + +K++KLMNG +QYIRE+ER  FLI+++ P+  +
Sbjct: 1052 VTVVHIEFRIVCPGEGLPPELVQDMFHSSRWVTKEGLGLSMCRKILKLMNGDIQYIRESERCYFLIILDLPMTRR 1126          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYA_PETCR (Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    2 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDA 241
            +++ +VHLEFRITH   G+PE+ +  MF      S EG+ L IS+KLVKLMNG V Y+REA +S+F+I +E   A ++++
Sbjct: 1050 QSVQLVHLEFRITHTGAGVPEEAVSQMFGSDSETSEEGISLLISRKLVKLMNGDVHYLREAGKSTFIITVELAAASKRES 1129          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYB_SOYBN (Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.449e-15
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   14 IVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 232
            ++H EFR+  P  G+P +LI DMF +S+  ++EGLGL +S+K++KLMNG VQYIREAER  F +L+E P+  +
Sbjct: 1079 LLHAEFRMVCPGEGLPPELIQDMFNNSRWGTQEGLGLSMSRKILKLMNGEVQYIREAERCYFYVLLELPVTRR 1151          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYB_SOLTU (Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.472e-15
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    8 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 232
            + +VH+E RI  P  G+P +L+ DMF+ S+  ++EGLGL + +K++KLMNG +QYIRE+ER  FLI+++ P+  +
Sbjct: 1050 VTVVHIELRIICPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKMLKLMNGEIQYIRESERCYFLIILDLPMTRK 1124          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYB_ARATH (Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.229e-15
Identity = 37/73 (50.68%), Postives = 54/73 (73.97%), Query Frame = 2
Query:   17 VHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQK 235
            +  EFR+  P  G+P +L+ DMF+ S+  S EGLGL + +K++KLMNG VQYIRE+ERS FLI++E P+  ++
Sbjct: 1083 IRTEFRMACPGEGLPPELVRDMFHSSRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILELPVPRKR 1155          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYA_ARATH (Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.217e-15
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 2
Query:    2 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 232
            +++H+ +LE R+TH   GIPE L++ MF   +  S EGL L +S+KLVKLMNG VQY+R+A +SSF+I  E   A++
Sbjct: 1046 RSVHLANLEIRLTHTGAGIPEFLLNQMFGTEEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAELAAANK 1122          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYB1_SOLLC (Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 34/73 (46.58%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   14 IVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 232
            +VH+E RI  P  G+P +L+ DMF+ S+  ++EGLGL + +K++KLMNG +QYIRE+ER  F+I+++ P+  +
Sbjct: 1053 VVHIELRIICPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKMLKLMNGEIQYIRESERCYFMIILDLPMTRK 1125          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYA_PEA (Phytochrome A OS=Pisum sativum GN=PHYA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 36/77 (46.75%), Postives = 57/77 (74.03%), Query Frame = 2
Query:    2 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 232
            K++H+V+LE  ITH   G+PE  ++ MF ++   S EG+ L+IS+KL+KLMNG V+Y++EA +SSF++ +E   AH+
Sbjct: 1045 KSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAHK 1121          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHYA_LATSA (Phytochrome type A OS=Lathyrus sativus GN=PHYA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 36/77 (46.75%), Postives = 57/77 (74.03%), Query Frame = 2
Query:    2 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 232
            K++H+V+LE  ITH   G+PE  ++ MF ++   S EG+ L+IS+KL+KLMNG V+Y++EA +SSF++ +E   AH+
Sbjct: 1045 KSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAHK 1121          
BLAST of DY258282 vs. ExPASy Swiss-Prot
Match: PHY_MOUSC (Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 2
Query:    8 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGA--SREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDADKTK 253
            + + +++FR++HP  G+PE LI  MF  +     S+EGLGL I +KLV+LMNG VQY RE ER+ FL+ +E PLA + D    K
Sbjct: 1041 VSVANVDFRVSHPGEGLPEDLIDQMFDRADARVKSQEGLGLSICRKLVRLMNGEVQYRREGERNFFLLQLELPLAQRDDQASMK 1124          
The following BLAST results are available for this feature:
BLAST of DY258282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PHYB_TOBAC2.920e-1648.00Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV... [more]
PHYA_PETCR8.497e-1647.50Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2... [more]
PHYB_SOYBN1.449e-1552.05Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1[more]
PHYB_SOLTU2.472e-1546.67Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV... [more]
PHYB_ARATH3.229e-1550.68Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1... [more]
PHYA_ARATH4.217e-1549.35Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1... [more]
PHYB1_SOLLC5.508e-1546.58Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE... [more]
PHYA_PEA9.395e-1546.75Phytochrome A OS=Pisum sativum GN=PHYA PE=3 SV=1[more]
PHYA_LATSA9.395e-1546.75Phytochrome type A OS=Lathyrus sativus GN=PHYA PE=... [more]
PHY_MOUSC1.227e-1447.62Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AA03FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258282 ID=DY258282; Name=DY258282; organism=Citrus clementina; type=EST; length=809bp
GAAAAATATACACATTGTTCACCTTGAATTCCGGATCACTCATCCAGCAC
CTGGAATCCCTGAAAAGTTAATTCATGATATGTTTTACCATAGCCAGGGT
GCCTCAAGGGAAGGTCTTGGCCTATACATCAGCCAAAAGCTTGTTAAGCT
TATGAATGGCACTGTGCAGTATATCAGAGAGGCGGAAAGATCATCCTTCC
TTATCCTCATTGAATTTCCTTTGGCCCACCAAAAAGATGCTGATAAAACC
AAATAACCAGCTCAGTTTAATGAGCAAATGAACAAGTTGTGCTGACGCAT
AACATGATGCTGAGAAGTAGCATGTCATTCTGGTGAATGAATGCCTCTTT
GTTCAGTTTTAATCATGGATTTTCTCAAGGTTGGGTGATGCTGGAAATTT
ACCCCCTCGACTTGGCATGGTGGGTTATCTCGGTAAAGCCACTGAAGCAG
CAGTGTGGAGTTGTACTCGGAGATTTTGAAAATGAAGAAACCTGAGTTTC
CAGTGAAGACCTATACAACCTGCATCTTCAACTCAGATAGAATCTTAATC
TTGTCTTTTGTAACATCATTTTTCCACGTACATTGTTTCTCAATGAGAAC
AAAGAAAAAGAAAAATCTAATTTGGTCACAGTTTGTAACTCTGGAGTAAG
ACTCTCCCAGCAAGTGTCTCAACAACATAAAGCACATAGCACACTGTACA
GTGAGACTTCATTGATAATCAAACCAGAAGTGTATTGTTCTCCAGCTCTG
GACCTGGGGATAGTCTGTTGTAACTTCTCTGCATATGAATTAAACGAAGT
GTGACGACC
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