DY258285

Overview
NameDY258285
Unique NameDY258285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 52/159 (32.70%), Postives = 75/159 (47.17%), Query Frame = 3
Query:   24 YDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRK-----EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGL 485
            Y   K   + L   Y +  G+E R+ R  N YGP      GR      A   RK     +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A+++    D    I   P  E     R  D +  KE LGW P + L+ GL
Sbjct:  175 YGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGR--EKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPTMKLKDGL 330          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.526e-13
Identity = 52/171 (30.41%), Postives = 82/171 (47.95%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPN--------AKIEFTPNTEHDPHNRK--PDISRAKELLGWEPKVSLRKGLPKMV 497
            S Y   K  +D L   +H   G+ V      N YGP    +  +++   +A AL  EPL VYGDGKQ R + FVSD  E +  ++    VG  +N+G   E   +E+ Q +   +D +         + +    T+   H+R+   D S+ K+ LGWEP  +  +G+ + V
Sbjct:  156 SPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGIAQTV 324          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.993e-13
Identity = 45/165 (27.27%), Postives = 86/165 (52.12%), Query Frame = 3
Query:   15 LSCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 506
            +S Y   KR+ + +   YH   G+++   R F  YG     D       F  + L  + + VY  G   R F ++SD+V+G++R ++ +     FNLGN     ++   +++++ ++  AK +F P  + D      D+S++++LLG++PKV++ +GL +    F
Sbjct:  154 ISLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPD--MAYFKFAKNILLGKEIEVYNYGNMERDFTYISDVVDGILRAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNWF 316          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.400e-13
Identity = 51/167 (30.54%), Postives = 80/167 (47.90%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPN--------AKIEFTPNTEHDPHNRK--PDISRAKELLGWEPKVSLRKGL 485
            S Y   K  +D L   +H   G+ V      N YGP    +  +++   +A AL  EPL VYGDGKQ R + FVSD  E +  ++    VG  +N+G   E   +E+ Q +   +D +         + +    T+   H+R+   D S+ K+ LGWEP  +  +G+
Sbjct:  156 SPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGI 320          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: ACBB_ACTS5 (dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain 50/110) GN=acbB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 50/166 (30.12%), Postives = 79/166 (47.59%), Query Frame = 3
Query:   18 SCYDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-FNLGNPGEFTMLELAQVVQETID-PNAKIEFTPNTEHDPHNRKPDISRAKELLGWEPKVSLRKGLPKMVKDFR 509
            S Y   K  +D L L YH+  G++V + R  N YGPR   +  +++  FV   L    + VYGDG+  R +  VSD   GL   +     G  +++G   E T LEL +++ E    P ++I F  + +        D S+    LG+ P+V    G+ + V  +R
Sbjct:  150 SPYAASKAGSDLLALAYHQTHGMDVVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAGRAGEVYHIGGGWEATNLELTEILLEACGAPASRISFVTDRKGHDRRYSLDYSKIAGELGYRPRVDFTDGIAETVAWYR 313          
BLAST of DY258285 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.437e-11
Identity = 49/170 (28.82%), Postives = 79/170 (46.47%), Query Frame = 3
Query:   24 YDEGKRTADTLTLDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVTNFVAHALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR-LMEGEHVGPFNLGNPGEFTMLELA----QVVQETIDPNAKIEFTPNTEHDPHN--RKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 512
            Y   K  A+     Y       V I R  N YGP    +  RV+  F++         ++G G Q R+F + +D+VE  +  L +GE    +N+G   E ++++LA    Q+++ET   +    +       PHN  R P  S     LGW+PKV   +G+ K V+ +R+
Sbjct:  166 YASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPE--RVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRK 333          
The following BLAST results are available for this feature:
BLAST of DY258285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GME1_ORYSI4.017e-1432.70GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
RFBB_XANCP1.526e-1330.41dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
Y1055_METJA1.993e-1327.27Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
RFBB_XANCB3.400e-1330.54dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
ACBB_ACTS51.292e-1230.12dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (... [more]
TGDS_MOUSE2.437e-1128.82dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AA06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258285 ID=DY258285; Name=DY258285; organism=Citrus clementina; type=EST; length=873bp
GCATGACTCGTGTCCTAAGTTGTTACGATGAGGGAAAGCGAACTGCTGAT
ACCTTGACCCTGGACTACCACCGAGGAGCTGGCGTGGAGGTTAGGATTGC
TAGAATTTTCAACACTTATGGACCCCGTATGTGTATCGATGATGGTCGCG
TTGTCACTAATTTTGTTGCTCATGCTTTAAGGAAGGAGCCTTTGACTGTA
TATGGAGATGGGAAGCAGACTAGGAGTTTCCAATTTGTTTCTGATTTGGT
GGAGGGTCTGATGCGCCTCATGGAGGGAGAACATGTGGGTCCTTTTAATC
TTGGAAATCCGGGTGAATTCACCATGCTTGAACTTGCTCAGGTGGTCCAG
GAAACAATTGACCCAAATGCAAAAATAGAGTTCACGCCCAACACTGAACA
TGATCCACACAACAGGAAGCCTGATATCTCAAGGGCTAAAGAGCTTCTTG
GTTGGGAACCAAAGGTATCATTGAGGAAGGGTCTCCCCAAGATGGTCAAA
GATTTCCGGCAGCGTATCTTTGGTGACCACAAGGAAGGTGGTGCAGGTGC
CACCCCCGACACCACGTCATCGGCGTAACTTGGCCCGTGTACTTCTTAGA
GTGATCCAAGGAAGGGGAAATGTTTGGTTGAGAACCATTCCCCCTTTTTC
CTCCTCGAGAACAACATATGGTAGCCACATTCCACCGCAGCCGCGGTAGC
AGCAGATGAGCCCTTTGTTATCTTTATCCGGCTTAGATTTCCGGGTGCCC
TGATATAAATTCCTTTCCCAATTTCCCTGTAATTTCCCATGTAACCCTGA
TCCCTGACCCTGATAGACAGCAAGCATTACCGTTTCAATTTATCCCTTCC
TTATCCTCCGATTGCAAAAAAAA
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