DY258288

Overview
NameDY258288
Unique NameDY258288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1220
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258288 vs. ExPASy Swiss-Prot
Match: GLGA_METJA (Probable glycogen synthase OS=Methanocaldococcus jannaschii GN=glgA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.607e-20
Identity = 74/273 (27.11%), Postives = 131/273 (47.99%), Query Frame = 3
Query:  132 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPL-----------------TDKYIGVKYDASTVMDAKPLLK-----------------------EALQAEVGLPVDRNI--PVIGFIGRLEEQKGSDILAAAIPHFI-KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTXG 821
            +L+LP       +   G     +G  + +++ GI  +D V TVSP +A+E+ +       +   +      GI+NG+D+ E++P+                    YI   Y A    + KP +K                        A   EV   VD +I  P+IGF+GR   QKG + +  AIP  + K +++ + L  G + +E++L+ L   +  +   +  +++PL+ ++ AG+D+I++PS +EPCGL+Q+ AM Y T P++A+  G
Sbjct:  139 ILDLPTTLTIHNEAFKGEMIEYKGEVMTFLELGIKYADAVNTVSPSHAEEIKNYP----YIKKYLNNKPFCGILNGIDIDEYDPMKIIERMCNLSNNKLDPRNYAYIS-PYSAEDSHNIKPKIKYSWFYRGGVYEYVEDWNKIDKGISATDVEVHGGVDGDIETPLIGFVGRATHQKGFNTMFEAIPELLEKHDIRFVFLTKGDRDIEERLKNLANEHDGRILALIGYSLPLSSLVFAGSDWIIMPSYWEPCGLVQMEAMAYCT-PVIATETG 405          
BLAST of DY258288 vs. ExPASy Swiss-Prot
Match: MOK12_SCHPO (Cell wall alpha-1,3-glucan synthase mok12 OS=Schizosaccharomyces pombe GN=mok12 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.104e-12
Identity = 58/162 (35.80%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  363 DVQEWNPLTDKYIGVKYDASTVMDAK-PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGT-----GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTXGFG 827
            D++  N LTD  + V +    V++AK  LLK+  Q    L VD +  ++ F+GR   QKG D++A   P  + E NVQ+I +G      G+   EK LEQ+   +P +      F   +   + AG DF LIPSR EP GL+ +   R G + I + T G G
Sbjct: 1423 DLKLLNHLTDDPVDVDF----VLEAKRKLLKKQTQEWANLDVDPSAQLLVFVGRWSHQKGIDLIADLAPKLLTEHNVQLITIGPVIDLHGQFAAEK-LEQIAKRFPTRVLCKPVFTA-VPPFLFAGTDFALIPSRDEPFGLVAVEFGRKGVLCIGSRTGGLG 1578          
BLAST of DY258288 vs. ExPASy Swiss-Prot
Match: AGS1_SCHPO (Cell wall alpha-1,3-glucan synthase ags1 OS=Schizosaccharomyces pombe GN=ags1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 8.840e-11
Identity = 56/158 (35.44%), Postives = 77/158 (48.73%), Query Frame = 3
Query:  387 TDKYIGVKYDASTVMD-----AKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGT-----GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTXGFG 827
            TD+ +  K  A T +D     +K   K   Q   GL V+    ++ F+GR   QKG D++A   P  ++   VQ+I +G      GK   EK L+ L+  YP +     KF   L   I +GADF LIPSR EP GL+ +   R G + I A   G G
Sbjct: 1396 TDEIVDDKAVAITDIDPDMEKSKVEHKRLAQEWAGLEVNEKYDLLVFVGRWSSQKGIDLIADIAPSLLESYKVQLICVGPIIDLYGKFAAEK-LDVLQKKYPTRVFSQPKFT-QLPPYIFSGADFALIPSRDEPFGLVAVEFGRKGALGIGARVGGLG 1551          
The following BLAST results are available for this feature:
BLAST of DY258288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
GLGA_METJA1.607e-2027.11Probable glycogen synthase OS=Methanocaldococcus j... [more]
MOK12_SCHPO2.104e-1235.80Cell wall alpha-1,3-glucan synthase mok12 OS=Schiz... [more]
AGS1_SCHPO8.840e-1135.44Cell wall alpha-1,3-glucan synthase ags1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB04FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258288 ID=DY258288; Name=DY258288; organism=Citrus clementina; type=EST; length=1220bp
GGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGCCCAAA
GGGATGTACAAAAGTGCCAAAGTTGTTTTTTGTATCCACAATATTGCTTA
CCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTCCAGCTC
AATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCTGTGAGA
GGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGACATGGT
CTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTGAAGACA
AAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAGGGAATT
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGNTGGGTTTGGTTGACACTGTGGAANGAAGGCTTT
ACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCC
CGTAAATGTGGCTGCAGTGTCACCACCGTCCGAAGACTCTTGCAACCTTA
TGGACTCAAGCTTTGGCTGAAATGATAAAAATGGGCTGGCCCCAAAATCT
TTCAGGGAAAGAACCCACTTAAAAATGGGAAGAAAACCCACCTTAACCCC
GAAAATTGCTGGGAATTGAACCCCGGAATTGACCGGCAAAAAAATTCCCC
CCCTTTGCCAAGGAAAAAATGGGCCCCCTCCCCTTAACTCAAGGCCACAA
AAAACCCCCCCTCTTTTTTTTTTTGAACCCCCCAAAACCTTTCTCCCCTA
TATCTTCCCCCCCACCCCCC
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