DY258290

Overview
NameDY258290
Unique NameDY258290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258290_ssr247 microsatellite DY258290_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6814 contig Ccv1_Contig6814:936..2236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.780e-26
Identity = 71/199 (35.68%), Postives = 97/199 (48.74%), Query Frame = 2
Query:    5 ITEIVYKGSHNHPKPXXXXXXXXXXXXXXXXXXXTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVXXXXXXXXXXXXXXXXXXXFDEDEPEAKRWKIEGES-EGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 598
            + EIV KG H H  P                   ++    +++ S    GS    SA+T E    S    D                     +E EP+ +  K   +S + +S PG +     + VV    D+ I  DGYRWRKYGQK+VKGNP+PR+YY+CT  GCPVRKH+E A  + +AVI TY+G HNHD+P  +
Sbjct:  212 VVEIVNKGLHTHEPPRKTSFSPREIRVTTAIRPVSEDDTVVEELSIVPSGSDP--SASTKEYICESQTLVD-----------RKRHCENEAVEEPEPKRRLKKDNSQSSDSVSKPGKKN----KFVVHAAGDVGICGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVENTKAVIITYKGVHNHDMPVPK 393          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.742e-26
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            R +REPR   QT SD+D+LDDGY+WRKYGQKVVK + +PRSYY+CTH  C V+K VER S D R VITTYEG+HNH
Sbjct:  126 RKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK10_ARATH (Probable WRKY transcription factor 10 OS=Arabidopsis thaliana GN=WRKY10 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 8.089e-26
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 2
Query:  281 DEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 610
            D   P  KR + E  S  I A  +RT +  R+++Q  SD D  +DGYRWRKYGQKVVKGNPNPRSY+KCT+  C V+KHVER + +++ V+TTY+G HNH  P AR S S
Sbjct:  267 DPQPPPPKRRRYE-VSNMIGA--TRTSKTQRIILQMESDEDNPNDGYRWRKYGQKVVKGNPNPRSYFKCTNIECRVKKHVERGADNIKLVVTTYDGIHNHPSPPARRSNS 373          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.398e-24
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  284 EDEPEAKRWK-IEGESEGISAPGSRTV-------REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA-ARGSGSRA 616
            ED  +++R + + GE + IS    +T        REPRV   T S++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+  D   VITTYEG+HNH +P   RGS + A
Sbjct:  122 EDSGKSRRKRELVGEEDQISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGSSAAA 241          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  347 GSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 592
            G +  RE RV   T S+ID L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+  D   VITTYEGKHNH +P+
Sbjct:  115 GEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPS 196          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.757e-23
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            R VREPR   +T S++D+LDDGYRWRKYGQKVVK   +PRSYY+CT   C V+K VER + D R VITTYEG+H H
Sbjct:  204 RKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.435e-22
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  284 EDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDV 586
            + E E+ + + EG S+ + +   +  ++ R   QT S +DILDDGYRWRKYGQK VK N  PRSYY+CT+ GC V+K V+R + D   V+TTYEG H+H +
Sbjct:   26 QGEEESSKVRSEGCSKSVES-SKKKGKKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHPI 125          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.181e-22
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 589
            +  RE R    T SDID LDDGYRWRKYGQK VK +P PRSYY+CT  GC V+K VER+S D   V+TTYEG+H H  P
Sbjct:  202 KKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFP 280          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.426e-22
Identity = 53/101 (52.48%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  284 EDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDV 586
            E++P +K+ K E              RE R   QT S +DILDDGYRWRKYGQK VK NP PRSYYKCT  GC V+K V+R   D   V+TTY+G H H V
Sbjct:   37 EEKPRSKKKKKE--------------REARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTHAV 123          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.255e-22
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  362 REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 598
            +EPRV   T +++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+  D   VITTYE +HNH +P  R
Sbjct:  167 KEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNR 245          
The following BLAST results are available for this feature:
BLAST of DY258290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRK32_ARATH2.780e-2635.68Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRK12_ARATH4.742e-2668.42Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK10_ARATH8.089e-2654.55Probable WRKY transcription factor 10 OS=Arabidops... [more]
WRK28_ARATH3.398e-2450.00Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK71_ARATH3.757e-2360.98Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK13_ARATH3.757e-2364.47Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK75_ARATH2.435e-2248.51Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK48_ARATH3.181e-2262.03Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK45_ARATH5.426e-2252.48Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRKY8_ARATH9.255e-2258.23Probable WRKY transcription factor 8 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258290 ID=DY258290; Name=DY258290; organism=Citrus clementina; type=EST; length=1301bp
GCAGATAACTGAGATTGTTTACAAGGGCAGTCACAATCATCCCAAGCCTC
AATCTACAAGGAGATCATCGTCATCCTCGGTTAATTCTAATGCCATCCAA
GCATCTACTCAACATTCAAATGAAATACAAGATCAGTCATATGCTACACA
TGGAAGTGGACAGATGGATTCAGCTGCAACCCCAGAGAATTCTTCGATAT
CGGTGGGAGATGATGACGTTGATCAGGGTTCACAGAAGAGTAAATCAGGA
GGAGGAGGAGCTGGAGGAGGAGATGATTTTGATGAAGATGAACCTGAGGC
CAAAAGATGGAAAATTGAGGGTGAAAGTGAAGGCATTTCAGCTCCTGGAA
GTAGAACAGTGAGAGAACCAAGAGTTGTTGTTCAAACCACCAGTGACATT
GACATTCTAGATGATGGGTACAGATGGAGGAAATATGGCCAAAAAGTTGT
AAAGGGGAATCCAAATCCAAGGAGTTATTACAAGTGTACGCATCCAGGTT
GTCCAGTGAGAAAGCATGTTGAGAGAGCATCACACGATCTTAGAGCAGTG
ATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCGGCAGCTCGCGG
CAGCGGCAGCAGGGCTCTGCCGGATAATAGCAGCAATAATAACCATAACA
GTAACAGCAATAGTAACAACAACGGGACACTGCCCGTAAGGGCATCGGCA
GTGGCTCATCATCCTAACAACAACTCGATTCTCAATCCTGTTCACAATCT
GAGGGTATCCTCATCTGAAGGCCAAGCACCCTATACCCTCGAAATGTTGC
AGGGCAACGGCAGCTTCCGGTTTCCCCGATATGGAAATGCTTTGAGGGTC
TATATGAATGAGGTTCAACAGCAAAAAAATGTGTTATCAAGAAGCAAGGA
AAAACCAAGGGATCATGACCCCTTCTTCCAATCCTTGCCTCTTTGAAACT
TGCCCAAAATTGAAAAGAATTTACCGTTACTACCCATTGGAAAGGGAATT
AAAATGAAAAAATTCAAAAGAAAAAAAAAAATTACCTTCCTTTGTTAATT
GCCTTCTGTTTTGTTGTGTTGTTTGGTTGGAATTTTCCACCCCATTTTTG
GAAAGGGAAAATCCACAAATTTGAAGGAAAAAATAAAAATAATAAAAACC
TTTCTTTTTTGTTTTTTTTTTTTTTATAAATTTTTTTTTTGGAGGCCCCC
CCTTTTGTTCAAAAACAACCCAAAAAGGGGCCCCTCCTTTTTTTTTTTTT
TTTGTTTTTTTTTTTTTTTTTTTTTGATATATATTTTTTATTCTTCTTTT
T
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