DY258290

Overview
NameDY258290
Unique NameDY258290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258290_ssr247 microsatellite DY258290_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6814 contig Ccv1_Contig6814:936..2236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.255e-22
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            + +R+PR    T SD+D L+DGYRWRKYGQK VK +P PRSYY+CT+  C V+K VER+S D   VITTYEG+H H
Sbjct:  128 KRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCH 203          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.255e-22
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  347 GSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            G RT+   R+   T SD D+LDDGYRWRKYGQK VK N +PRSYY+CT+  C V+K V+R + D   V+TTYEG HNH
Sbjct:   93 GKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 170          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.517e-21
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            R+ + PR+   T SD D+LDDGYRWRKYGQK VK N +PRSYY+CT+  C V+K V+R + D   V+TTYEG HNH
Sbjct:   79 RSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 154          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 5.999e-21
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  377 VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 610
            V Q + + D L+DG+RWRKYGQKVV GN  PRSYY+CT   C  RKHVERAS D RA ITTYEGKHNH +  +  S S
Sbjct:  338 VSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHHLLLSPPSSS 415          

HSP 2 Score: 83.1889 bits (204), Expect = 3.766e-15
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  326 SEGISAPGSRTVRE-PRVVVQTTSDIDILD-DGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 592
            S+G    G   V++ P      TS  D    DGY WRKYGQK VKG+  PRSYYKCTHP CPV+K VER+     + I  Y+G+HNH  P+
Sbjct:  135 SQGTHRAGPNLVQKVPSFTESETSTGDRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEI-VYQGEHNHSKPS 224          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.835e-21
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 2
Query:  341 APGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHP-GCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 595
            A    T+R+ RV V+  S+  +L DG +WRKYGQK+ KGNP PR+YY+CT   GCPVRK V+R + D   +ITTYEG HNH +P A
Sbjct:  269 AAAEATMRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPA 354          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.023e-20
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  284 EDEPEAKRWKIEGESEG----ISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 595
            E+ PE +  KI+  +             T+R+ RV V+  S+  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GCPVRK V+R + D   +ITTYEG HNH +P A
Sbjct:  266 EESPETESNKIQKVNSTTPTTFDQTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPA 374          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK50_ARATH (Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.023e-20
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  371 RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            RV  +T S++++LDDG++WRKYG+K+VK +P+PR+YYKC+  GCPV+K VER   D   VITTYEG HNH
Sbjct:  100 RVAFKTRSEVEVLDDGFKWRKYGKKMVKNSPHPRNYYKCSVDGCPVKKRVERDRDDPSFVITTYEGSHNH 169          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.336e-20
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  362 REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 589
            RE RV   T S++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+  D   V+TTYEG+H H  P
Sbjct:  158 REARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHISP 233          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.745e-20
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  320 GESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 589
            G+++G  A     V+  RV V+   D   ++DG +WRKYGQK+ KGNP PR+YY+CT  PGCPVRK V+R + D+  +ITTYEG H+H +P
Sbjct:  198 GDADG-EAGQQNHVKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLP 287          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.977e-20
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  356 TVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHP-GCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 595
            T+R+ RV V+  S+  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GCPVRK V+R + D   +ITTYEG HNH +P A
Sbjct:  279 TMRKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPA 359          
The following BLAST results are available for this feature:
BLAST of DY258290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRK57_ARATH9.255e-2260.53Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK56_ARATH9.255e-2258.97Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK24_ARATH3.517e-2159.21Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK44_ARATH5.999e-2162.82WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRK42_ARATH7.835e-2154.65Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRKY6_ARATH1.023e-2045.87WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK50_ARATH1.023e-2060.00Probable WRKY transcription factor 50 OS=Arabidops... [more]
WRK23_ARATH1.336e-2059.21Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK72_ARATH1.745e-2050.55Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK31_ARATH2.977e-2055.56Probable WRKY transcription factor 31 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258290 ID=DY258290; Name=DY258290; organism=Citrus clementina; type=EST; length=1301bp
GCAGATAACTGAGATTGTTTACAAGGGCAGTCACAATCATCCCAAGCCTC
AATCTACAAGGAGATCATCGTCATCCTCGGTTAATTCTAATGCCATCCAA
GCATCTACTCAACATTCAAATGAAATACAAGATCAGTCATATGCTACACA
TGGAAGTGGACAGATGGATTCAGCTGCAACCCCAGAGAATTCTTCGATAT
CGGTGGGAGATGATGACGTTGATCAGGGTTCACAGAAGAGTAAATCAGGA
GGAGGAGGAGCTGGAGGAGGAGATGATTTTGATGAAGATGAACCTGAGGC
CAAAAGATGGAAAATTGAGGGTGAAAGTGAAGGCATTTCAGCTCCTGGAA
GTAGAACAGTGAGAGAACCAAGAGTTGTTGTTCAAACCACCAGTGACATT
GACATTCTAGATGATGGGTACAGATGGAGGAAATATGGCCAAAAAGTTGT
AAAGGGGAATCCAAATCCAAGGAGTTATTACAAGTGTACGCATCCAGGTT
GTCCAGTGAGAAAGCATGTTGAGAGAGCATCACACGATCTTAGAGCAGTG
ATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCGGCAGCTCGCGG
CAGCGGCAGCAGGGCTCTGCCGGATAATAGCAGCAATAATAACCATAACA
GTAACAGCAATAGTAACAACAACGGGACACTGCCCGTAAGGGCATCGGCA
GTGGCTCATCATCCTAACAACAACTCGATTCTCAATCCTGTTCACAATCT
GAGGGTATCCTCATCTGAAGGCCAAGCACCCTATACCCTCGAAATGTTGC
AGGGCAACGGCAGCTTCCGGTTTCCCCGATATGGAAATGCTTTGAGGGTC
TATATGAATGAGGTTCAACAGCAAAAAAATGTGTTATCAAGAAGCAAGGA
AAAACCAAGGGATCATGACCCCTTCTTCCAATCCTTGCCTCTTTGAAACT
TGCCCAAAATTGAAAAGAATTTACCGTTACTACCCATTGGAAAGGGAATT
AAAATGAAAAAATTCAAAAGAAAAAAAAAAATTACCTTCCTTTGTTAATT
GCCTTCTGTTTTGTTGTGTTGTTTGGTTGGAATTTTCCACCCCATTTTTG
GAAAGGGAAAATCCACAAATTTGAAGGAAAAAATAAAAATAATAAAAACC
TTTCTTTTTTGTTTTTTTTTTTTTTATAAATTTTTTTTTTGGAGGCCCCC
CCTTTTGTTCAAAAACAACCCAAAAAGGGGCCCCTCCTTTTTTTTTTTTT
TTTGTTTTTTTTTTTTTTTTTTTTTGATATATATTTTTTATTCTTCTTTT
T
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