DY258290

Overview
NameDY258290
Unique NameDY258290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258290_ssr247 microsatellite DY258290_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6814 contig Ccv1_Contig6814:936..2236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.520e-19
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  362 REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 589
            R+ RV V+   +   ++DG +WRKYGQK  KGNP PR+YY+CT  PGCPVRK V+R   D+  +ITTYEG HNH +P
Sbjct:  219 RKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLP 295          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.299e-19
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  371 RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 583
            RV  +T S ID++DDG++WRKYG+K VK N N R+YYKC+  GC V+K VER   D   VITTYEG HNH+
Sbjct:   97 RVAFRTRSKIDVMDDGFKWRKYGKKSVKNNINKRNYYKCSSEGCSVKKRVERDGDDAAYVITTYEGVHNHE 167          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 4.299e-19
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  362 REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHP-GCPVRKHVERASHDLRAVITTYEGKHNHDVP 589
            R+ RV V+  SD   ++DG +WRKYGQK+ KGNP PR+YY+CT   GCPVRK V+R + D   + TTYEG HNH +P
Sbjct:  223 RKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLP 299          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.615e-19
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  335 ISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            + +   + ++ PR   +T SD DILDDGYRWRKYGQK VK +  PRSYY+CT   C V+K V+R S +   V TTYEG HNH
Sbjct:    5 VDSSRDKKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSIVETTYEGIHNH 86          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.577e-19
Identity = 59/157 (37.58%), Postives = 75/157 (47.77%), Query Frame = 2
Query:    2 QITEIVYKGSHNHPKPXXXXXXXXXXXXXXXXXXXTQHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVXXXXXXXXXXXXXXXXXXXFDEDEPEAKRWKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 472
            Q+ EIVYK  HNH  P                   + H N +  +  A+  S         E +S++   + +                    DEDEPE KR   E +   ++    RTVREPRV+ QTTS++D LDDGYRWRKYGQKVVKGNP PR
Sbjct:  511 QVAEIVYKDRHNHEPPNQGKDGSTTYLSGS-----STHINCMSSELTASQFSSNKTKIEQQEAASLATTIEYMSEASDNEEDSNGETSEGEK-DEDEPEPKRRITEVQVSELADASDRTVREPRVIFQTTSEVDNLDDGYRWRKYGQKVVKGNPYPR 661          

HSP 2 Score: 73.1738 bits (178), Expect = 3.897e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  407 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 610
            ++DGY W+KYGQK VKG+  P SYYKCT+ GCP ++ VER S D +     Y+ +HNH+ P     GS
Sbjct:  467 VNDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVER-SLDGQVAEIVYKDRHNHEPPNQGKDGS 533          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.251e-18
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 2
Query:  359 VREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 589
            V++ RV V++  +   ++DG +WRKYGQK+ KGNP PR+YY+CT    CPVRK V+R S D+  +I+TYEG HNH +P
Sbjct:  174 VKKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNHPLP 251          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.134e-18
Identity = 50/106 (47.17%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  278 FDEDEPEAKRWKIEGESEGI----SAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-THPGCPVRKHVERASHDLRAVITTYEGKHNH 580
            F+ D  E    KI G   G      +  +R  R  RV   +    DI  D Y WRKYGQK +KG+P+PR YYKC T  GCP RKHVERA  D   +I TYEG+H H
Sbjct:  195 FEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRH 300          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.787e-18
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 2
Query:  281 DEDEPEAKRWKIEGESEGISAPGSRTVRE-PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVP----------AARGSGSRA 616
            +E++ E ++ K +   +       +T ++ P+V   T S++  LDDGY+WRKYGQK VK +P PR+YY+CT   C V+K VER+  D  +VITTYEG+H H  P           + GS SRA
Sbjct:   74 EEEDGEEQQHKTKKRFKFTKMSRKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLLIMPKEGSSPSNGSASRA 196          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.639e-18
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGS 610
            R +R P +  + +   D+  D Y WRKYGQK +KG+P+PR YYKC+   GCP RKHVERA+ D   +I TYEG HNH + AA  +G+
Sbjct:  224 RIIRVPAISAKMS---DVPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHSLSAADLAGA 307          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.806e-17
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-THPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 592
            RTVR P +  +     DI  D Y WRKYGQK +KG+P+PR YYKC T  GCP RKHVERA  D   +I TYEG+H H+  A
Sbjct:  230 RTVRVPAISAKIA---DIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQSA 307          
The following BLAST results are available for this feature:
BLAST of DY258290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRKY9_ARATH2.520e-1955.84Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK51_ARATH4.299e-1959.15Probable WRKY transcription factor 51 OS=Arabidops... [more]
WRK47_ARATH4.299e-1955.84Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK43_ARATH5.615e-1953.66Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRK19_ARATH9.577e-1937.58Probable WRKY transcription factor 19 OS=Arabidops... [more]
WRK61_ARATH1.251e-1852.56Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK17_ARATH2.134e-1847.17Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK68_ARATH2.787e-1841.46Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK15_ARATH3.639e-1850.57Probable WRKY transcription factor 15 OS=Arabidops... [more]
WRK11_ARATH1.806e-1755.56Probable WRKY transcription factor 11 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AB06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258290 ID=DY258290; Name=DY258290; organism=Citrus clementina; type=EST; length=1301bp
GCAGATAACTGAGATTGTTTACAAGGGCAGTCACAATCATCCCAAGCCTC
AATCTACAAGGAGATCATCGTCATCCTCGGTTAATTCTAATGCCATCCAA
GCATCTACTCAACATTCAAATGAAATACAAGATCAGTCATATGCTACACA
TGGAAGTGGACAGATGGATTCAGCTGCAACCCCAGAGAATTCTTCGATAT
CGGTGGGAGATGATGACGTTGATCAGGGTTCACAGAAGAGTAAATCAGGA
GGAGGAGGAGCTGGAGGAGGAGATGATTTTGATGAAGATGAACCTGAGGC
CAAAAGATGGAAAATTGAGGGTGAAAGTGAAGGCATTTCAGCTCCTGGAA
GTAGAACAGTGAGAGAACCAAGAGTTGTTGTTCAAACCACCAGTGACATT
GACATTCTAGATGATGGGTACAGATGGAGGAAATATGGCCAAAAAGTTGT
AAAGGGGAATCCAAATCCAAGGAGTTATTACAAGTGTACGCATCCAGGTT
GTCCAGTGAGAAAGCATGTTGAGAGAGCATCACACGATCTTAGAGCAGTG
ATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCGGCAGCTCGCGG
CAGCGGCAGCAGGGCTCTGCCGGATAATAGCAGCAATAATAACCATAACA
GTAACAGCAATAGTAACAACAACGGGACACTGCCCGTAAGGGCATCGGCA
GTGGCTCATCATCCTAACAACAACTCGATTCTCAATCCTGTTCACAATCT
GAGGGTATCCTCATCTGAAGGCCAAGCACCCTATACCCTCGAAATGTTGC
AGGGCAACGGCAGCTTCCGGTTTCCCCGATATGGAAATGCTTTGAGGGTC
TATATGAATGAGGTTCAACAGCAAAAAAATGTGTTATCAAGAAGCAAGGA
AAAACCAAGGGATCATGACCCCTTCTTCCAATCCTTGCCTCTTTGAAACT
TGCCCAAAATTGAAAAGAATTTACCGTTACTACCCATTGGAAAGGGAATT
AAAATGAAAAAATTCAAAAGAAAAAAAAAAATTACCTTCCTTTGTTAATT
GCCTTCTGTTTTGTTGTGTTGTTTGGTTGGAATTTTCCACCCCATTTTTG
GAAAGGGAAAATCCACAAATTTGAAGGAAAAAATAAAAATAATAAAAACC
TTTCTTTTTTGTTTTTTTTTTTTTTATAAATTTTTTTTTTGGAGGCCCCC
CCTTTTGTTCAAAAACAACCCAAAAAGGGGCCCCTCCTTTTTTTTTTTTT
TTTGTTTTTTTTTTTTTTTTTTTTTGATATATATTTTTTATTCTTCTTTT
T
back to top