DY258290

Overview
NameDY258290
Unique NameDY258290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258290_ssr247 microsatellite DY258290_ssr247:247..258. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6814 contig Ccv1_Contig6814:936..2236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.103e-14
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  413 DGYRWRKYGQKVVKGNPNPRSYYKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 595
            DGY+WRKYGQK+ + NP+PR+Y++C+  P C V+K V+R++ D   ++ TYEG HNH  P A
Sbjct:  147 DGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNHTGPHA 208          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.103e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  359 VREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-HPGCPVRKHVER-ASHDLRAVITTYEGKHNHDVP 589
            +++ RV V+ + +   ++DG +WRKYGQK  K NP PR+YY+C+    CPVRK V+R    +  A +TTYEG H+H +P
Sbjct:  186 LKKTRVCVKASCEDPSINDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDHPLP 264          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK29_ARATH (Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.276e-14
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  350 SRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-THPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 604
            S+  ++ RVV Q   + ++L D + WRKYGQK +KG+P PRSYY+C +  GC  RK VER   +      TY  +HNH++P  R S
Sbjct:  115 SKKNQQKRVVEQVKEE-NLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNPEKFTITYTNEHNHELPTRRNS 199          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.026e-12
Identity = 40/92 (43.48%), Postives = 48/92 (52.17%), Query Frame = 2
Query:  347 GSRTVREPRVVVQTTSDIDIL-----DDGYRWRKYGQKVVKGNPNPRSYYKC-THPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 604
            GS T R  R  +Q      +       D + WRKYGQK +KG+P PR YY+C T  GC  RK VER   D +  I TY  +HNH  P  R S
Sbjct:  102 GSNTSRSKRRKIQHKKVCHVAAEALNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHPAPTHRNS 193          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.285e-12
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  413 DGYRWRKYGQKVVKGNPNPRSYYKCTH-PGCPVRKHVERASHDLRAVITTYEGKHNHDVP 589
            D + WRKYGQK +KG+P PR YY+C+   GCP RK VER+  D   ++ TY  +HNH  P
Sbjct:   75 DSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWP 134          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.285e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  353 RTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-THPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 604
            R  ++ R +   T + ++  D + WRKYGQK +KG+P PR+YY+C +  GC  RK VER++ D    I TY G+H H  P  R S
Sbjct:  147 RKNQQKRTICHVTQE-NLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRPTHRNS 230          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.682e-12
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  323 ESEGISAPGSRTVR--EPRVVVQTTSDIDIL---------DDGYRWRKYGQKVVKGNPNPRSYYKC-THPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 595
            E   IS P  +  R  E RVV    +D++            D + WRKYGQK +KG+P PR YY+C +  GCP RK VER+  D   ++ TY   HNH  P++
Sbjct:   30 EDSKISKPTPKKRRNVEKRVVSVPIADVEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPFPSS 132          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.134e-11
Identity = 44/140 (31.43%), Postives = 61/140 (43.57%), Query Frame = 2
Query:  368 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-THPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSRALPDXXXXXXXXXXXXXXXXGTLPVRASAVAHHPNNNSILNPVHNLRVSSSEGQAPY 784
            P  +   +S   +  D + WRKYGQK +KG+P PR YY+C +  GC  RK VER+  D   ++ TY  +HNH  P  R     AL                   T     S  +    NNS  +  +N  + SS    P+
Sbjct:  201 PAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQR----NALAGSTRSSSSSSLNPSSKSSTAAATTSPSSRVFQNNSSKDEPNNSNLPSSSTHPPF 336          
BLAST of DY258290 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.526e-11
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 2
Query:  368 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-THPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGS 604
            P  +   +S   +  D + WRKYGQK +KG+P PR YY+C +  GC  RK VER+  D   ++ TY  +HNH  P  R +
Sbjct:  203 PAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPIQRNA 282          
The following BLAST results are available for this feature:
BLAST of DY258290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRK60_ARATH7.103e-1451.61Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRK36_ARATH7.103e-1445.57Probable WRKY transcription factor 36 OS=Arabidops... [more]
WRK29_ARATH9.276e-1444.19Probable WRKY transcription factor 29 OS=Arabidops... [more]
WRK22_ARATH1.026e-1243.48WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRK65_ARATH2.285e-1251.67Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK27_ARATH2.285e-1242.35Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK69_ARATH8.682e-1239.81Probable WRKY transcription factor 69 OS=Arabidops... [more]
WRK35_ARATH1.134e-1131.43Probable WRKY transcription factor 35 OS=Arabidops... [more]
WRK14_ARATH2.526e-1141.25Probable WRKY transcription factor 14 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB06FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258290 ID=DY258290; Name=DY258290; organism=Citrus clementina; type=EST; length=1301bp
GCAGATAACTGAGATTGTTTACAAGGGCAGTCACAATCATCCCAAGCCTC
AATCTACAAGGAGATCATCGTCATCCTCGGTTAATTCTAATGCCATCCAA
GCATCTACTCAACATTCAAATGAAATACAAGATCAGTCATATGCTACACA
TGGAAGTGGACAGATGGATTCAGCTGCAACCCCAGAGAATTCTTCGATAT
CGGTGGGAGATGATGACGTTGATCAGGGTTCACAGAAGAGTAAATCAGGA
GGAGGAGGAGCTGGAGGAGGAGATGATTTTGATGAAGATGAACCTGAGGC
CAAAAGATGGAAAATTGAGGGTGAAAGTGAAGGCATTTCAGCTCCTGGAA
GTAGAACAGTGAGAGAACCAAGAGTTGTTGTTCAAACCACCAGTGACATT
GACATTCTAGATGATGGGTACAGATGGAGGAAATATGGCCAAAAAGTTGT
AAAGGGGAATCCAAATCCAAGGAGTTATTACAAGTGTACGCATCCAGGTT
GTCCAGTGAGAAAGCATGTTGAGAGAGCATCACACGATCTTAGAGCAGTG
ATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCGGCAGCTCGCGG
CAGCGGCAGCAGGGCTCTGCCGGATAATAGCAGCAATAATAACCATAACA
GTAACAGCAATAGTAACAACAACGGGACACTGCCCGTAAGGGCATCGGCA
GTGGCTCATCATCCTAACAACAACTCGATTCTCAATCCTGTTCACAATCT
GAGGGTATCCTCATCTGAAGGCCAAGCACCCTATACCCTCGAAATGTTGC
AGGGCAACGGCAGCTTCCGGTTTCCCCGATATGGAAATGCTTTGAGGGTC
TATATGAATGAGGTTCAACAGCAAAAAAATGTGTTATCAAGAAGCAAGGA
AAAACCAAGGGATCATGACCCCTTCTTCCAATCCTTGCCTCTTTGAAACT
TGCCCAAAATTGAAAAGAATTTACCGTTACTACCCATTGGAAAGGGAATT
AAAATGAAAAAATTCAAAAGAAAAAAAAAAATTACCTTCCTTTGTTAATT
GCCTTCTGTTTTGTTGTGTTGTTTGGTTGGAATTTTCCACCCCATTTTTG
GAAAGGGAAAATCCACAAATTTGAAGGAAAAAATAAAAATAATAAAAACC
TTTCTTTTTTGTTTTTTTTTTTTTTATAAATTTTTTTTTTGGAGGCCCCC
CCTTTTGTTCAAAAACAACCCAAAAAGGGGCCCCTCCTTTTTTTTTTTTT
TTTGTTTTTTTTTTTTTTTTTTTTTGATATATATTTTTTATTCTTCTTTT
T
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