DY258292

Overview
NameDY258292
Unique NameDY258292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1071 contig Ccv1_Contig1071:1..1280. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4D_MOUSE (Cysteine protease ATG4D OS=Mus musculus GN=Atg4d PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.558e-18
Identity = 64/231 (27.71%), Postives = 93/231 (40.26%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR----------------------------------KPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTL 866
            F +DF SR+ ++YR+ F P+    +TSD GWGCMLRS QM++AQ LL H L R WR                                    L+   DR +  I+  F D   +PF +H L++ G++ G  AG W GP  +                  C  +   +  VS D          V   D +R  S +    A+W  +          E +NP Y+P ++  L
Sbjct:  112 FQRDFVSRLWLTYRRDFPPLAGGSLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWRWVEGTGLASSEMPGPASPSRCRGPGRRGPPRWTQGALEMEQDRWHRRIVSWFADHPRAPFGLHRLVELGRSSGKKAGDWYGPSVVAHILRKAVE--------SCSEVSRLVVYVSQD--------CTVYKADVARLLS-WPDPTAEWKSVVILVPVRLGGETLNPVYVPCVKELL 325          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_BOTFB (Probable cysteine protease atg4 OS=Botryotinia fuckeliana (strain B05.10) GN=atg4 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.647e-18
Identity = 67/227 (29.52%), Postives = 101/227 (44.49%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            F  DF ++I ++YR  F  I  S+                        TSD GWGCM+RS Q L+A ALL  R+GR WR+ +    +R   +IL LF D   +P+SIH  ++ G  A G   G W GP A  R  +AL+  Q            + +Y ++GD      G+ V       +  S+     +D+TP           +K+ P Y   L+ +L  P+++
Sbjct:  103 FLDDFEAKIWLTYRSNFPAIAKSQDPKALSAMSLSVRLRSQLVDQGGFTSDTGWGCMIRSGQSLLANALLTLRMGREWRRGVSSNEER---KILSLFADDPRAPYSIHKFVEHGASACGKHPGEWFGPSATARCIQALSNSQAKS--------ELRVY-ITGD------GSDVY----EDKFMSIAKPNHSDFTPTLILVGTRLGLDKITPVYWEALKYSLQMPQSV 307          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4D_PIG (Cysteine protease ATG4D OS=Sus scrofa GN=ATG4D PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.138e-17
Identity = 62/227 (27.31%), Postives = 94/227 (41.41%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR--------KPLQKP----------------------FDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTL 866
            F +DF SR+ ++YR+ F P+    +TSD GWGCMLRS QM++AQ LL H L R W          P   P                       +R + +I+  F D   +PF +H L++ G++ G  AG W GP         +A   R       +   + +YV       +   A +V   D +          A+W  +          E +NP Y+P ++  L
Sbjct:  111 FQRDFVSRLWLTYRRDFPPLAGGCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWSQGVGLGPPESSPNRYRGPAHWMPPHWVQAAPELEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGP-------SLVAHILRKAVESCSEVTRLVVYVSQDCTVYKADVARLVARPDPT----------AEWKAVVILVPVRLGGETLNPVYVPCVKELL 320          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_PICAN (Probable cysteine protease ATG4 OS=Pichia angusta GN=ATG4 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.495e-16
Identity = 74/232 (31.90%), Postives = 101/232 (43.53%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPI-----GDSKI-------------------TSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGD--EDGERGGAPVVCIDDASRHCSVFSKGQ--ADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            F +D  SRI ++YR GF  I     G S +                   T+D GWGCM+R+SQ L+A +LL  RLGR WR   Q     ++ EI+  F D  T+PFSIHN ++ G    G   G W GP A  RS + L      +TGL         +  SGD  ED                   +F   Q  A+  P+          + VNP Y   L+ TL +P+++
Sbjct:   74 FLRDVHSRIWLTYRSGFPLIKRAEDGPSPLSFGSLIRGTVDLATVTKGFTTDAGWGCMIRTSQSLLANSLLQLRLGRGWRYD-QTRECAKHAEIVSWFVDIPTAPFSIHNFVEQGANCAGKKPGEWFGPSAAARSIQVLCEANYDKTGL------KVYFTASGDIYED------------------ELFELAQQGAELRPVLILAGIRLGVKNVNPLYWDFLKKTLGWPQSV 280          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_SCLS1 (Probable cysteine protease atg4 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg4 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.952e-16
Identity = 66/227 (29.07%), Postives = 96/227 (42.29%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            F  DF ++I ++YR  F  I  S+                        TSD GWGCM+RS Q L+A ALL  R+GR WR+      +R   +IL LF D   +P+SIH  ++ G  A G   G W GP        A ARC +A T    +S  + +Y+     D           +D     S+       +TP           +K+ P Y   L+ +L  P+++
Sbjct:  103 FLDDFEAKIWLTYRSNFPAIAKSQDPKALSAMSLSVRLRSQLVDQGGFTSDTGWGCMIRSGQSLLANALLTLRMGREWRRGSSSNEER---KILSLFADDPRAPYSIHKFVEHGASACGKHPGEWFGP-------SAAARCIQALTNSQVES-ELRVYITGDGSD---------VYEDT--FMSIAKPNSTKFTPTLILVGTRLGLDKITPVYWEALKSSLQMPQSV 307          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_PICPA (Probable cysteine protease ATG4 OS=Pichia pastoris GN=ATG4 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.550e-16
Identity = 53/138 (38.41%), Postives = 67/138 (48.55%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK---------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALAR 623
            F  D  S+I ++YR GF PI   K                      TSD GWGCM+R+SQ L+A ALLF  LGR W    + P + E+  I+  F D    PFSIHN +Q G K      G W GP A  R+ + L +
Sbjct:   65 FIDDVYSKIWLTYRAGFPPIARDKDSPTFTLGALLRGQFDFNEIGFTSDAGWGCMIRTSQSLLANALLFLHLGRDWVFKAKDPANVEHDRIISWFVDIPDEPFSIHNFVQQGIKCCDKKPGEWFGPSAASRAIKNLCK 202          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_CHAGB (Probable cysteine protease ATG4 OS=Chaetomium globosum GN=ATG4 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 3.330e-16
Identity = 54/139 (38.85%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPI----------------------GDSK-ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGK-AYGLAAGSWVGPYAMCRSWEALA 620
            F  DF SRI ++YR GF+PI                      GD    +SD GWGCM+RS Q L+A ALL  +LGR WR+      +R    I+ LF D   +P+S+ N ++ G  A G   G W GP A  R  +ALA
Sbjct:  113 FLDDFGSRIWMTYRTGFEPIPRSTDPKAASALSFTMRLKTSFGDQTGFSSDTGWGCMIRSGQSLLANALLISQLGRDWRRTTDPGAER---NIVALFADDARAPYSLQNFVKHGAIACGKHPGEWFGPSATARCIQALA 248          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_MAGGR (Cysteine protease ATG4 OS=Magnaporthe grisea GN=ATG4 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 4.349e-16
Identity = 54/139 (38.85%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA-YGLAAGSWVGPYAMCRSWEALA 620
            F  DF SRI ++YR GF+PI  S                         T+D GWGCM+R+ Q L+A +LL  RLGR WR+      +R   ++L LF D   +P+SIHN +  G A  G   G W GP A  R   ALA
Sbjct:  151 FLNDFESRIWMTYRSGFEPIPRSTDPTASSRMSFAMRLKTMADQQAGFTTDSGWGCMIRTGQSLLANSLLTCRLGRSWRRGQAPDEER---KLLSLFADDPRAPYSIHNFVAHGAAKCGKYPGEWFGPSATARCIHALA 286          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_ASPNC (Probable cysteine protease atg4 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.349e-16
Identity = 55/139 (39.57%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPI----GDSK-------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALA 620
            F  DF SRI ++YR  F PI    GD K                    TSD GWGCM+RS Q L+A AL    LGR WR+  +  F+ E  ++L LF D+ T+PFS+H  ++ G ++ G   G W GP A  +  EAL+
Sbjct:   78 FLLDFESRIWMTYRSNFPPIPRVEGDDKSASMTLGVRLRSQLVDTQGFTSDTGWGCMIRSGQSLLANALSMLVLGRDWRRGAR--FEEE-SQLLSLFADTPTAPFSVHRFVKHGAESCGKYPGEWFGPSATAKCIEALS 213          
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_COCIM (Probable cysteine protease ATG4 OS=Coccidioides immitis GN=ATG4 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.680e-16
Identity = 66/227 (29.07%), Postives = 90/227 (39.65%), Query Frame = 3
Query:  276 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIXXXXXXXXXXEKVNPRYIPTLRVTLTFPKAL 884
            F  DF S+   +YR  F  I  S+                        T+D GWGCM+RS Q L+A AL    LGR WR+  +    +E  E+L LF D+  +PFSIH  +  G  A G   G W GP A  R  EAL+          C+   + +YV+S   D        +   D  R             P           E V P Y   LR  + +P+++
Sbjct:  105 FLDDFESKFWFTYRSNFPAIPKSRDPDTPLALTLSVRLRSQFLDTHGFTADTGWGCMIRSGQSLLANALSILNLGRDWRRGSK---IKEECELLSLFADNPQAPFSIHRFVDYGASACGKHPGEWFGPSATARCIEALSN--------ECKHTDLNVYVMSDGSDVHEDQFRQIAGPDGIR-------------PTLILLGVRLGIESVTPVYWEALRAIIRYPQSV 307          
The following BLAST results are available for this feature:
BLAST of DY258292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ATG4D_MOUSE3.558e-1827.71Cysteine protease ATG4D OS=Mus musculus GN=Atg4d P... [more]
ATG4_BOTFB4.647e-1829.52Probable cysteine protease atg4 OS=Botryotinia fuc... [more]
ATG4D_PIG5.138e-1727.31Cysteine protease ATG4D OS=Sus scrofa GN=ATG4D PE=... [more]
ATG4_PICAN1.495e-1631.90Probable cysteine protease ATG4 OS=Pichia angusta ... [more]
ATG4_SCLS11.952e-1629.07Probable cysteine protease atg4 OS=Sclerotinia scl... [more]
ATG4_PICPA2.550e-1638.41Probable cysteine protease ATG4 OS=Pichia pastoris... [more]
ATG4_CHAGB3.330e-1638.85Probable cysteine protease ATG4 OS=Chaetomium glob... [more]
ATG4_MAGGR4.349e-1638.85Cysteine protease ATG4 OS=Magnaporthe grisea GN=AT... [more]
ATG4_ASPNC4.349e-1639.57Probable cysteine protease atg4 OS=Aspergillus nig... [more]
ATG4_COCIM5.680e-1629.07Probable cysteine protease ATG4 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB10FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258292 ID=DY258292; Name=DY258292; organism=Citrus clementina; type=EST; length=1280bp
GCTTGTTTAATTCTGCTTTCTCAGTCTTTGAAACGTATAGTGAGTCGTCA
GCTAGTGAAAAGAAGGCAGTTCATAATAAAAGTAATGGGTGGACAGCAGC
TGTGAAGAGACTAGTGACTGCTGGCTCAATGAGGAGAATACATGAACGTG
TACTAGGGCCGAGCAGGACTGGAATTTCTAGCTCAACCAGTGACATATGG
CTTCTTGGTGTGTGCCATAAAATTGCACAGGATGAGGCCTTGGGTGATGC
AGCTGGTAACAATGGATTAGCGGAATTCAATCAAGATTTTTCATCAAGAA
TTCTGATTTCATATCGTAAAGGTTTTGATCCTATTGGTGATTCAAAGATT
ACAAGTGATGTAGGCTGGGGTTGCATGCTTCGAAGTAGTCAGATGCTTGT
TGCACAGGCATTGCTTTTTCATCGATTGGGAAGACCTTGGAGAAAACCTT
TGCAGAAGCCATTTGATCGTGAATATGTTGAGATCTTGCACCTTTTTGGT
GATTCTGAGACATCACCTTTCTCCATTCACAATCTTCTTCAAGCTGGAAA
GGCTTATGGCCTTGCAGCTGGATCATGGGTTGGCCCATATGCCATGTGTC
GCTCATGGGAAGCTCTAGCTCGTTGTCAGAGAGCGGAAACTGGCCTTGGA
TGCCAGTCACTTCCAATGGCTATTTATGTTGTTTCAGGTGATGAAGATGG
GGAGCGAGGTGGAGCTCCAGTTGTGTGTATTGACGATGCATCTAGACATT
GTTCTGTGTTTTCAAAAGGTCAAGCTGACTGGACACCAATTCTTCTGCTT
GTTCCCTTGGNTCTCGGACTTGAGAAAGTAAATCCCAGGTACATTCCAAC
CTTGCGGGTGACACTCACCTTCCCCAAAGCCTTGGCATCGTGGGTGGAAA
CCTGGTGCCTCAACTACATTGTGGTGTGCCAGAGAAAGCGCTATCTACCT
GATCCCATGAACCTCAGCTGGTTATAATATTGGAAAGATGTCCAAAAGCC
GACCCTCCCCAATCAAACCAATGTCCTAGGCCCCCTCCCCTGGATTAATT
GATCCCCCCTGGGCAAAAGATTTCATTGTGAGGAAAAAAATAAATTTAAA
TATTTTTTGGCCCCGGGCCCCCCCCCAACCAAAAAAAACAAAGGGGGGCC
CCCCTTTTTTCCCCGGGGACCCCCACCCCCAAAAAAACCCCCCCCCCCCC
CCCCACGGGGTTGTTGTTGGGGGGGAAACAAGGGGGGGGGGGGGGTCCCC
CCAAAAGAAAAGAATTTTCTCCTTTCGTGG
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