DY258292

Overview
NameDY258292
Unique NameDY258292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1071 contig Ccv1_Contig1071:1..1280. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4C_HUMAN (Cysteine protease ATG4C OS=Homo sapiens GN=ATG4C PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.639e-13
Identity = 52/156 (33.33%), Postives = 68/156 (43.59%), Query Frame = 3 
Query:  276 FNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP----------------LQKPF----------DREYV---------------------EILH-----LFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP 587
            F +DF SRI ++YR+ F  I  S +T+D GWGC LR+ QML+AQ L+ H LGR W  P                  K F          +RE+                      E+ H      FGDS  + F +H L++ GK  G  AG W GP
Sbjct:   79 FRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGP 234
[Close]
BLAST of DY258292 vs. ExPASy Swiss-Prot
Match: ATG4_SCHPO (Probable cysteine protease atg4 OS=Schizosaccharomyces pombe GN=atg4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.677e-13
Identity = 55/158 (34.81%), Postives = 72/158 (45.57%), Query Frame = 3 
Query:  129 MRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMC 599
            M R  ER L  + T      + IW LG  +KI                 F  D  S I I+YR G +  G   +TSD GWGCM+RS+Q L+A  L   R+  P         +++  EIL LF D  ++PFSIH  +  GK    +  G W GP   C
Sbjct:    4 MARFLERYLHFAPTNTEPPGTLIWFLGHSYKIEDSQWPEK---------FLYDSFSLITITYRSGIE--GLENMTSDTGWGCMIRSTQTLLANCL---RICYP---------EKQLKEILALFADEPSAPFSIHQFVTMGKTLCDINPGQWFGPTTSC 138
The following BLAST results are available for this feature:
BLAST of DY258292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ATG4C_HUMAN2.639e-1333.33Cysteine protease ATG4C OS=Homo sapiens GN=ATG4C P... [more]
ATG4_SCHPO7.677e-1334.81Probable cysteine protease atg4 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB10FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258292 ID=DY258292; Name=DY258292; organism=Citrus clementina; type=EST; length=1280bp
GCTTGTTTAATTCTGCTTTCTCAGTCTTTGAAACGTATAGTGAGTCGTCA
GCTAGTGAAAAGAAGGCAGTTCATAATAAAAGTAATGGGTGGACAGCAGC
TGTGAAGAGACTAGTGACTGCTGGCTCAATGAGGAGAATACATGAACGTG
TACTAGGGCCGAGCAGGACTGGAATTTCTAGCTCAACCAGTGACATATGG
CTTCTTGGTGTGTGCCATAAAATTGCACAGGATGAGGCCTTGGGTGATGC
AGCTGGTAACAATGGATTAGCGGAATTCAATCAAGATTTTTCATCAAGAA
TTCTGATTTCATATCGTAAAGGTTTTGATCCTATTGGTGATTCAAAGATT
ACAAGTGATGTAGGCTGGGGTTGCATGCTTCGAAGTAGTCAGATGCTTGT
TGCACAGGCATTGCTTTTTCATCGATTGGGAAGACCTTGGAGAAAACCTT
TGCAGAAGCCATTTGATCGTGAATATGTTGAGATCTTGCACCTTTTTGGT
GATTCTGAGACATCACCTTTCTCCATTCACAATCTTCTTCAAGCTGGAAA
GGCTTATGGCCTTGCAGCTGGATCATGGGTTGGCCCATATGCCATGTGTC
GCTCATGGGAAGCTCTAGCTCGTTGTCAGAGAGCGGAAACTGGCCTTGGA
TGCCAGTCACTTCCAATGGCTATTTATGTTGTTTCAGGTGATGAAGATGG
GGAGCGAGGTGGAGCTCCAGTTGTGTGTATTGACGATGCATCTAGACATT
GTTCTGTGTTTTCAAAAGGTCAAGCTGACTGGACACCAATTCTTCTGCTT
GTTCCCTTGGNTCTCGGACTTGAGAAAGTAAATCCCAGGTACATTCCAAC
CTTGCGGGTGACACTCACCTTCCCCAAAGCCTTGGCATCGTGGGTGGAAA
CCTGGTGCCTCAACTACATTGTGGTGTGCCAGAGAAAGCGCTATCTACCT
GATCCCATGAACCTCAGCTGGTTATAATATTGGAAAGATGTCCAAAAGCC
GACCCTCCCCAATCAAACCAATGTCCTAGGCCCCCTCCCCTGGATTAATT
GATCCCCCCTGGGCAAAAGATTTCATTGTGAGGAAAAAAATAAATTTAAA
TATTTTTTGGCCCCGGGCCCCCCCCCAACCAAAAAAAACAAAGGGGGGCC
CCCCTTTTTTCCCCGGGGACCCCCACCCCCAAAAAAACCCCCCCCCCCCC
CCCCACGGGGTTGTTGTTGGGGGGGAAACAAGGGGGGGGGGGGGGTCCCC
CCAAAAGAAAAGAATTTTCTCCTTTCGTGG
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