DY258302

Overview
NameDY258302
Unique NameDY258302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258302_ssr17 microsatellite DY258302_ssr17:17..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1075 contig Ccv1_Contig1075:1..1289. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.829e-25
Identity = 86/252 (34.13%), Postives = 127/252 (50.40%), Query Frame = 2
Query:  221 LKSSVLESSDLDSGGKNDRQTVPSFT--EFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRW----------VAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLF---HWETQPMKWAMRLRVALYLAQALEYC-SSKGRALYHDLHAYRILFDKDGNPRLSSFGPYENSRDG----KSYST-----NLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            L  S  +SS   +  K + + + S T   FS  +L+ AT +F  D++V E G      V++G LD              +AVKR +   +   R++L E   +G L    L  LIG C E ++RLLV EFM   +L  HLF   + + +P+ W +R++VAL  A+ L +  S   + +Y D+ A  IL D D N +LS FG    +RDG    +SY +        +  PEY+ TG +   S VYSFG +LL
Sbjct:   20 LHLSSCKSSSSATAHKTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGF---GCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSDPVKVIYRDIKASNILLDSDFNAKLSDFG---LARDGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLL 265          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.153e-24
Identity = 78/211 (36.97%), Postives = 115/211 (54.50%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDND-RWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHW--ETQPMKWAMRLRVALYLAQALEYCSSKGR--ALYHDLHAYRILFDKDGNPRLSSFGPYENSRDG-KSY-STNL----AFTPPEYMRTGKVTPESVVYSFGTLLL 901
            F+ ++L  AT +F PD  + E G      VYKG+LD+  + VAVK+  +     +R+FL E   +  L    L NLIG C + D+RLLV EFMP  +L  HL     + + + W MR+++A   A+ LE+   K     +Y D  +  IL D+  +P+LS FG  +    G KS+ ST +     +  PEY  TG++T +S VYSFG + L
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGR---VYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFL 281          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.569e-24
Identity = 87/249 (34.94%), Postives = 125/249 (50.20%), Query Frame = 2
Query:  227 SSVLESSDLDSGGKNDRQTVPS--FTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRW----------VAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWET--QPMKWAMRLRVALYLAQALEYC-SSKGRALYHDLHAYRILFDKDGNPRLSSFGPYENSRDGK----SY-STNL----AFTPPEYMRTGKVTPESVVYSFGTLLL 901
            SS   SS + +  K + + + S     F+  +L+ AT +F PD+++ E G      V+KG LD              +AVK+ ++  +   R++L E   +G L    L  LIG C E + RLLV EFM   +L  HLF      +P+ W +R+ VAL  A+ L +  S   + +Y D+ A  IL D D N +LS FG    +RDG     SY ST +     +  PEYM +G +   S VYSFG LLL
Sbjct:   28 SSRKSSSTVAAAQKTEGEILSSTPVKSFTFNELKLATRNFRPDSVIGEGGF---GCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEHRLLVYEFMQKGSLENHLFRRGAYFKPLPWFLRVNVALDAAKGLAFLHSDPVKVIYRDIKASNILLDADYNAKLSDFG---LARDGPMGDLSYVSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLL 270          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 4.382e-24
Identity = 72/207 (34.78%), Postives = 113/207 (54.59%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKG--RALYHDLHAYRILFDKDGNPRLSSFGPYENSRDGKSY-STNLA----FTPPEYMRTGKVTPESVVYSFGTLLL 901
            F+  +L++AT DF P N + E G      VYKG L++ R VAVK  S  +     QF+ E  A+ ++    L  L GCC+E + R+LV E++PN +L + LF  +T  + W+ R  + L +A+ L Y   +   R ++ D+ A  IL D    P++S FG  +   D K++ ST +A    +  PEY   G +T ++ VY+FG + L
Sbjct:  682 FTYSELKSATQDFDPSNKLGEGGFGP---VYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLHLDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVAL 885          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: CRK22_ARATH (Cysteine-rich receptor-like protein kinase 22 OS=Arabidopsis thaliana GN=CRK22 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.382e-24
Identity = 83/245 (33.88%), Postives = 119/245 (48.57%), Query Frame = 2
Query:  194 FSICWFHCHLKSSVLESSDLDSGGKNDRQTVPSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQ-PMKWAMRLRVALYLAQALEYCSSKGR--ALYHDLHAYRILFDKDGNPRLSSFG-----PYENSRDGKSY-STNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            F ICW    L+ +  ES D D    N  Q       +  + +  AT  FS  N +   GE     VYKGK  N   VAVKR SK +  D+++F  EA  V  ++   LA L+G C + D + L+ EF+ N++L   LF  E Q  + W  R ++   +AQ + +     +   +Y D  A  IL D D NP++S FG       E SR   ++ +    +  PEY   GK + +S VYSFG L+L
Sbjct:  313 FFICWRRKSLQRTEFES-DSDVSTTNSLQ-------YEFKTIEAATNKFSKSNKL---GEGRFGEVYKGKFSNGTEVAVKRLSKVSGQDTKKFRNEAVLVSKIQHRNLARLLGFCLQGDGKFLIYEFVLNKSLDYFLFDPEKQGELDWTRRYKIIGGIAQGILHLHQDPQLTIIYRDFKASNILLDADMNPKISDFGMATVFGMEESRGNTNWIAETFVYMSPEYAVHGKFSMKSDVYSFGILIL 546          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 9.762e-24
Identity = 75/209 (35.89%), Postives = 112/209 (53.59%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLF-HWETQ-PMKWAMRLRVALYLAQALEYCSSKGR--ALYHDLHAYRILFDKDGNPRLSSFGPYE-NSRDGKSYSTNLA----FTPPEYMRTGKVTPESVVYSFGTLLL 901
            FSL+Q++ AT +F   N + E G      VYKGKL +   +AVK+ S  +   +R+FL E   +  L    L  L GCC E  + LLV EF+ N +LA+ LF   ETQ  + W  R ++ + +A+ L Y   + R   ++ D+ A  +L DK  NP++S FG  + +  D    ST +A    +  PEY   G +T ++ VYSFG + L
Sbjct:  612 FSLRQIKIATNNFDSANRIGEGGFGP---VYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDSTHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGIVAL 817          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.175e-23
Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKR--FSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLF-HWETQPMKWAMRLRVALYLAQALEYC--SSKGRALYHDLHAYRILFDKDGNPRLSSFG-----PYENSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            FS + L  AT  FS  N + + G  S   VYKG L N + VAVKR  F+   W D   F  E   +  +  + L  L+GC     E LLV E++ N++L  +LF   + QP+ WA R ++ L  A+ + Y    S  R ++ D+    IL + D  PR++ FG     P + +    + +  L +  PEY+  GK+T ++ VYSFG L++
Sbjct:  311 FSYENLERATDYFSDKNKLGQGGSGS---VYKGVLTNGKTVAVKRLFFNTKQWVD--HFFNEVNLISQVDHKNLVKLLGCSITGPESLLVYEYIANQSLHDYLFVRKDVQPLNWAKRFKIILGTAEGMAYLHEESNLRIIHRDIKLSNILLEDDFTPRIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLMI 515          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.175e-23
Identity = 71/209 (33.97%), Postives = 111/209 (53.11%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQP-MKWAMRLRVALYLAQALEYC--SSKGRALYHDLHAYRILFDKDGNPRLSSFGPY------ENSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            F L  +  AT +FS +N + + G  +   VYKG L N + VAVKR +K +     +F  E   +  L+   L  L+G C E DE++LV EF+PN +L   +F  E +  + W MR R+   +A+ L Y    S+ + ++ DL A  IL D + NP+++ FG        E   + K  +    +  PEY+  G+++ +S VYSFG +LL
Sbjct:  341 FDLGMVLAATDEFSSENTLGQGGFGT---VYKGTLLNGQEVAVKRLTKGSGQGDIEFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSLDHFIFDDEKRSLLTWEMRYRIIEGIARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFDSDETRAETKRIAGTRGYMAPEYLNHGQISAKSDVYSFGVMLL 546          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.840e-23
Identity = 69/209 (33.01%), Postives = 110/209 (52.63%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQ--PMKWAMRLRVALYLAQALEYCSSKGR--ALYHDLHAYRILFDKDGNPRLSSFG-----PYENSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            F+L+Q++ AT +F P+N + E G      VYKG L +   +AVK+ S  +   +R+F+ E   +  L+   L  L GCC E  E LLV E++ N +LA+ LF  E Q   + W+ R +V + +A+ L Y   + R   ++ D+ A  +L D   N ++S FG       EN+      +  + +  PEY   G +T ++ VYSFG + L
Sbjct:  655 FTLKQIKRATNNFDPENKIGEGGFGP---VYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCL 860          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.840e-23
Identity = 69/209 (33.01%), Postives = 110/209 (52.63%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQP-MKWAMRLRVALYLAQALEYC--SSKGRALYHDLHAYRILFDKDGNPRLSSFGPY------ENSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            F L  +  AT DFS +N + + G  +   VYKG   N + VAVKR +K +     +F  E   +  L+ + L  L+G C E DE +LV EF+PN +L   +F  + +  + W +R R+   +A+ L Y    S+ + ++ DL A  IL D + NP+++ FG        E   + K  +    +  PEY+  G+++ +S VYSFG +LL
Sbjct:  336 FDLGMIVMATDDFSSENTLGQGGFGT---VYKGTFPNGQEVAVKRLTKGSGQGDMEFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYEFVPNSSLDHFIFDEDKRSLLTWEVRFRIIEGIARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFDSDETRAETKRIAGTRGYMAPEYLNHGQISAKSDVYSFGVMLL 541          
The following BLAST results are available for this feature:
BLAST of DY258302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
Y3545_ARATH8.829e-2534.13Probable receptor-like protein kinase At3g55450 OS... [more]
PBS1_ARATH1.153e-2436.97Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
BIK1_ARATH2.569e-2434.94Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
Y1561_ARATH4.382e-2434.78Probable LRR receptor-like serine/threonine-protei... [more]
CRK22_ARATH4.382e-2433.88Cysteine-rich receptor-like protein kinase 22 OS=A... [more]
Y1534_ARATH9.762e-2435.89Probable LRR receptor-like serine/threonine-protei... [more]
CRK3_ARATH2.175e-2333.81Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
CRK39_ARATH2.175e-2333.97Putative cysteine-rich receptor-like protein kinas... [more]
Y5344_ARATH2.840e-2333.01Probable LRR receptor-like serine/threonine-protei... [more]
CRK40_ARATH2.840e-2333.01Cysteine-rich receptor-like protein kinase 40 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AD07FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258302 ID=DY258302; Name=DY258302; organism=Citrus clementina; type=EST; length=1289bp
TTATTTGACCGAGCGCAGAGAGAGAGAGAGAGAGAGAGAGAGGCGGGGAG
AGACCTATAGTCCTACAGAGTGTTTTCGGTTTTCGGAGTTGCAGTTGCAC
GGAAGCAATGCCATACCGTCTGATCATTTGAAAAGCTTCTGATCGTTTGT
CCACCGTCTAATTTTTAATCAAATGGGGGGCCGTTGTTCCAAGTTTTCCA
TTTGCTGGTTCCACTGCCATCTCAAGTCTTCCGTCCTTGAATCCTCCGAT
CTCGACAGTGGGGGCAAAAACGACCGGCAAACAGTTCCGAGTTTCACTGA
GTTCAGCTTACAGCAACTGAGAACTGCCACGTGTGATTTCTCCCCCGACA
ACATAGTATCGGAACACGGTGAAAAATCTCCCAACATTGTTTACAAAGGG
AAGCTCGATAATGACCGTTGGGTCGCCGTTAAACGGTTCAGCAAATTCAA
CTGGCCCGATTCTCGCCAATTCCTCGAGGAGGCAAAGGCAGTGGGGAATT
TAAGGAGTGAGAGACTGGCGAATCTGATTGGTTGTTGCTATGAAGCCGAT
GAGAGATTGCTAGTCGCCGAGTTCATGCCGAATGAAACTCTTGCAAAACA
TCTCTTTCATTGGGAGACCCAGCCCATGAAATGGGCAATGAGGCTGAGGG
TGGCACTCTATTTGGCACAAGCTCTAGAATATTGCAGCAGCAAAGGGAGA
GCATTGTACCATGATCTNCATGCCTACAGAATCTTATTTGATAAGGATGG
CAATCCCAGGCTTTCTTCCTTTGGCCCTTATGAAAATAGTAGAGACGGTA
AAAGTTACAGCACTAACTTGGCTTTCACCCCACCCGAGTACATGAGAACA
GGTAAAGTGACCCCGGAAAGTGTTGTGTACAGCTTTGGCACCCTGTTGCT
AAATCTTCTGAGCGGCAAACCTATTCCCCCAGGCCTGCCCTTGATTTGAT
TCTAACCAGAATTTCTTATTGGTGATGACTCCGCCTCGGGAGGGCCTTTC
TCCAGGGAGAGGGGAACGAATTTAGGGGCGGTATACTTCCCCTTTTCTTG
CCGTCTGGAACCTCTGGAAAGGGCAAATGGTAATTCCCCTTGTTCATTTT
CCTCCGGGTCCCTTTCAAAAAAAACCCAAAGGTCTCCCTCTTTTGTTTTT
TTGGGGGGTTCCCCCCAGGGAAACCGCCCCCCTCTCCCCAAAACCCCCCT
GGGCTTTTTTACCCCCCCTCTGGGGGGGGAAGCGTTTGTTCCCAAAAGTG
GGGACCCCCCTTTCTGCGGCTCTTTTAACCGGTAAAAAA
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