DY258302

Overview
NameDY258302
Unique NameDY258302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258302_ssr17 microsatellite DY258302_ssr17:17..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1075 contig Ccv1_Contig1075:1..1289. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.106e-18
Identity = 66/246 (26.83%), Postives = 117/246 (47.56%), Query Frame = 2
Query:  221 LKSSVLESSDLDSGGKNDRQTVPSFTEFSLQQLR-----------TATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEY---CSSKGRALYHDLHAYRILFDKDGNPRLSSFGPYE-NSRDGKSYSTNL----AFTPPEYMRTGKVTPESVVYSFGTLLL 901
            ++ +V     L  GG +D + +  +    L+ L            +AT +F    ++ + G      VYK  L +    A+KR    +     +F  E + +  +R   L +L G C E  E +LV EFM   TL +HL+      + W  RL + +  A+ L+Y     S+G  ++ D+ +  IL D+    +++ FG  + +++D  + S N+     +  PEY++T K+T +S VY+FG +LL
Sbjct:  438 VEGTVWSPLPLHRGGSSDNRPISQYHNSPLRNLHLGLTIPFTDILSATNNFDEQLLIGKGGF---GYVYKAILPDGTKAAIKRGKTGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSNLPSLTWKQRLEICIGAARGLDYLHSSGSEGAIIHRDVKSTNILLDEHNIAKVADFGLSKIHNQDESNISINIKGTFGYLDPEYLQTHKLTEKSDVYAFGVVLL 680          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.106e-18
Identity = 65/214 (30.37%), Postives = 106/214 (49.53%), Query Frame = 2
Query:  293 FTEFSLQQLRTATCDFSPDNIVS--EHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLF-HWETQPMKWAMRLRVALYLAQALEYC--SSKGRALYHDLHAYRILFDKDGNPRLSSFGPYE-NSRDGKSYST-----NLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            F E  L  +   T   + +N  S  + G+    IVYKG+L + + +AVKR SK +   + +F+ E   +  L+   L  ++GCC E DE++L+ E++ N +L  +LF       + W  R  +   +A+ L Y    S+ R ++ DL    IL DK+  P++S FG      RD    +T        +  PEY   G  + +S V+SFG ++L
Sbjct:  508 FEELELPLIEMETVVKATENFSSCNKLGQGGFGIVYKGRLLDGKEIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIEGDEKMLIYEYLENLSLDSYLFGKTRRSKLNWNERFDITNGVARGLLYLHQDSRFRIIHRDLKVSNILLDKNMIPKISDFGMARIFERDETEANTMKVVGTYGYMSPEYAMYGIFSEKSDVFSFGVIVL 721          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.751e-18
Identity = 64/208 (30.77%), Postives = 102/208 (49.04%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEY--CSSKGRALYHDLHAYRILFDKDGNPRLSSFGPYEN--SRDGKSYST----NLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            F  Q++  AT  F   +++   G      VYKG L++   VAVKR +  +     +F  E + +  LR   L +LIG C E  E +LV E+M N  L  HL+  +  P+ W  RL + +  A+ L Y    +    ++ D+    IL D++   +++ FG  +   S D    ST    +  +  PEY R  ++T +S VYSFG +L+
Sbjct:  498 FMFQEIMDATNKFDESSLLGVGGFGR---VYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGADLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLM 702          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.751e-18
Identity = 65/205 (31.71%), Postives = 109/205 (53.17%), Query Frame = 2
Query:  326 ATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHW------ETQPMKWAMRLRVALYLAQALEYCSSK--GRALYHDLHAYRILFDKDGNPRLSSFGPYENSRDGKSY-STNLA----FTPPEYMRTGKVTPESVVYSFGTLLL 901
            AT  FS  NI+ + G  +   VYK  L  ++ VAVK+ S+     +R+F+ E + +G ++   L +L+G C  ++E+LLV E+M N +L     HW        + + W+ RL++A+  A+ L +         ++ D+ A  IL D D  P+++ FG        +S+ ST +A    + PPEY ++ + T +  VYSFG +LL
Sbjct:  913 ATDHFSKKNIIGDGGFGT---VYKACLPGEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLD----HWLRNQTGMLEVLDWSKRLKIAVGAARGLAFLHHGFIPHIIHRDIKASNILLDGDFEPKVADFGLARLISACESHVSTVIAGTFGYIPPEYGQSARATTKGDVYSFGVILL 1110          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.593e-18
Identity = 64/208 (30.77%), Postives = 106/208 (50.96%), Query Frame = 2
Query:  311 QQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHW-ETQPMKWAMRLRVALYLAQALEYC--SSKGRALYHDLHAYRILFDKDGNPRLSSFG---PYENSRDGKSYSTN-----LAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            + L+ AT +FSP+N +   G  S   VYKG     + +AVKR S  +     +F  E   +  L+   L  L+G C E  ER+LV EF+ N +L   +F   + Q + W +R ++   +A+ L Y    S+ R ++ DL A  IL D++ NP+++ FG    Y+  +      T+       +  PEY   G+ + ++ V+SFG L++
Sbjct:  352 ETLKAATDNFSPENELGRGGFGS---VYKGVFSGGQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASLDNFIFDLKKRQLLDWGVRYKMIGGVARGLLYLHEDSRYRIIHRDLKASNILLDQEMNPKIADFGLAKLYDTDQTSTHRFTSKIAGTYGYMAPEYAIYGQFSVKTDVFSFGVLVI 556          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.128e-18
Identity = 63/187 (33.69%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  368 GEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQ-PMKWAMRLRVALYLAQALEY--CSSKGRALYHDLHAYRILFDKDGNPRLSSFGPYENSRDGKS--YSTNLAFTP----PEYMRTGKVTPESVVYSFGTLLL 901
            GE    +VY G ++++  VAVK  S+ +    +QF  E   +  +    L  L+G C E    +L+ E+M N  L +HL    ++ P+ W  RLR+A   AQ LEY     K   ++ D+ +  IL D +   +L  FG   +   G     STN+A +P    PEY RT  +T +S V+SFG +LL
Sbjct:  598 GEGGFGVVYHGNVNDNEQVAVKVLSESSAQGYKQFKAEVDLLLRVHHINLVTLVGYCDEGQHLVLIYEYMSNGNLKQHLSGENSRSPLSWENRLRIAAETAQGLEYLHIGCKPPMIHRDIKSMNILLDNNFQAKLGDFGLSRSFPVGSETHVSTNVAGSPGYLDPEYYRTNWLTEKSDVFSFGVVLL 784          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: CRK17_ARATH (Cysteine-rich receptor-like protein kinase 17 OS=Arabidopsis thaliana GN=CRK17 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 6.128e-18
Identity = 65/210 (30.95%), Postives = 103/210 (49.05%), Query Frame = 2
Query:  299 EFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFH-WETQPMKWAMRLRVALYLAQALEYC--SSKGRALYHDLHAYRILFDKDGNPRLSSFGPY------ENSRDGKSYSTNLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            +F L+ +  AT +FS  N +   G      VYKG L N   +AVKR SK +     +F  E   V  L+   L  L+G   + +E+LLV EF+PN++L   LF   +   + W +R  +   + + + Y    S+ + ++ DL A  IL D D NP+++ FG        +   +         +  PEY+  G+ + +S VYSFG L+L
Sbjct:  346 QFDLKTIEAATGNFSEHNKLGAGGFGE---VYKGMLLNGTEIAVKRLSKTSGQGEIEFKNEVVVVAKLQHINLVRLLGFSLQGEEKLLVYEFVPNKSLDYFLFDPNKRNQLDWTVRRNIIGGITRGILYLHQDSRLKIIHRDLKASNILLDADMNPKIADFGMARIFGVDQTVANTARVVGTFGYMSPEYVTHGQFSMKSDVYSFGVLIL 552          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.004e-18
Identity = 63/208 (30.29%), Postives = 105/208 (50.48%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGRA---LYHDLHAYRILFDKDGNPRLSSFGPYENSRDGKSYST-----NLAFTPPEYMRTGKVTPESVVYSFGTLLL 901
            FSL +L+  T +F    I+   G  +   VY G +D+   VA+KR +  +     +F  E + +  LR   L +LIG C E  E +LV E+M N     HL+     P+ W  RL + +  A+ L Y  + G A   ++ D+ +  IL D+    +++ FG  ++   G+++ +     +  +  PEY R  ++T +S VYSFG +LL
Sbjct:  513 FSLSELQEVTKNFDASEIIGVGGFGN---VYIGTIDDGTQVAIKRGNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDHLYGKNLSPLTWKQRLEICIGAARGLHYLHT-GTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLL 716          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.365e-17
Identity = 66/213 (30.99%), Postives = 106/213 (49.77%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGR--ALYHDLHAYRILFDKDGNPRLSSFG-------PYENSRDGKSYSTNLAFTP----PEYMRTGKVTPESVVYSFGTLLL 901
            F+  +L  AT +F+    + + G      VYKG L +   VA+KR  + +    ++FL E + +  L    L +L+G C E  E++LV E+M N TL  ++     +P+ +AMRLR+AL  A+ + Y  ++      + D+ A  IL D     +++ FG       P       +  ST +  TP    PEY  T ++T +S VYS G +LL
Sbjct:  613 FTYAELALATDNFNSSTQIGQGGYGK---VYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNISVKLKEPLDFAMRLRIALGSAKGILYLHTEANPPIFHRDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLL 822          
BLAST of DY258302 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.365e-17
Identity = 65/206 (31.55%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  305 SLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLF-HWETQPMKWAMRLRVALYLAQALEYCSS--KGRALYHDLHAYRILFDKDGNPRLSSFGPYENSRDGKSYSTNLA-----FTPPEYMRTGKVTPESVVYSFGTLL 898
            SL  L  AT     DN   + G  S   VY G++ + + VAVK  +  +   +RQF+ E   +  +    L  LIG C EAD R+LV E+M N +L  HL    + +P+ W  RL++A   A+ LEY  +      ++ D+ +  IL D +   ++S FG    + +  ++ +++A     +  PEY  + ++T +S VYSFG +L
Sbjct:  597 SLPVLEEAT-----DNFSKKVGRGSFGSVYYGRMKDGKEVAVKITADPSSHLNRQFVTEVALLSRIHHRNLVPLIGYCEEADRRILVYEYMHNGSLGDHLHGSSDYKPLDWLTRLQIAQDAAKGLEYLHTGCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQTEEDLTHVSSVAKGTVGYLDPEYYASQQLTEKSDVYSFGVVL 797          
The following BLAST results are available for this feature:
BLAST of DY258302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
Y2232_ARATH2.106e-1826.83Probable receptor-like protein kinase At2g23200 OS... [more]
SRK6_BRAOE2.106e-1830.37Putative serine/threonine-protein kinase receptor ... [more]
THE1_ARATH2.751e-1830.77Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
EXS_ARATH2.751e-1831.71Leucine-rich repeat receptor protein kinase EXS OS... [more]
CRK28_ARATH3.593e-1830.77Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
Y4245_ARATH6.128e-1833.69Probable LRR receptor-like serine/threonine-protei... [more]
CRK17_ARATH6.128e-1830.95Cysteine-rich receptor-like protein kinase 17 OS=A... [more]
Y2214_ARATH8.004e-1830.29Probable receptor-like protein kinase At2g21480 OS... [more]
Y1684_ARATH1.365e-1730.99Probable LRR receptor-like serine/threonine-protei... [more]
Y1677_ARATH1.365e-1731.55Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AD07FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258302 ID=DY258302; Name=DY258302; organism=Citrus clementina; type=EST; length=1289bp
TTATTTGACCGAGCGCAGAGAGAGAGAGAGAGAGAGAGAGAGGCGGGGAG
AGACCTATAGTCCTACAGAGTGTTTTCGGTTTTCGGAGTTGCAGTTGCAC
GGAAGCAATGCCATACCGTCTGATCATTTGAAAAGCTTCTGATCGTTTGT
CCACCGTCTAATTTTTAATCAAATGGGGGGCCGTTGTTCCAAGTTTTCCA
TTTGCTGGTTCCACTGCCATCTCAAGTCTTCCGTCCTTGAATCCTCCGAT
CTCGACAGTGGGGGCAAAAACGACCGGCAAACAGTTCCGAGTTTCACTGA
GTTCAGCTTACAGCAACTGAGAACTGCCACGTGTGATTTCTCCCCCGACA
ACATAGTATCGGAACACGGTGAAAAATCTCCCAACATTGTTTACAAAGGG
AAGCTCGATAATGACCGTTGGGTCGCCGTTAAACGGTTCAGCAAATTCAA
CTGGCCCGATTCTCGCCAATTCCTCGAGGAGGCAAAGGCAGTGGGGAATT
TAAGGAGTGAGAGACTGGCGAATCTGATTGGTTGTTGCTATGAAGCCGAT
GAGAGATTGCTAGTCGCCGAGTTCATGCCGAATGAAACTCTTGCAAAACA
TCTCTTTCATTGGGAGACCCAGCCCATGAAATGGGCAATGAGGCTGAGGG
TGGCACTCTATTTGGCACAAGCTCTAGAATATTGCAGCAGCAAAGGGAGA
GCATTGTACCATGATCTNCATGCCTACAGAATCTTATTTGATAAGGATGG
CAATCCCAGGCTTTCTTCCTTTGGCCCTTATGAAAATAGTAGAGACGGTA
AAAGTTACAGCACTAACTTGGCTTTCACCCCACCCGAGTACATGAGAACA
GGTAAAGTGACCCCGGAAAGTGTTGTGTACAGCTTTGGCACCCTGTTGCT
AAATCTTCTGAGCGGCAAACCTATTCCCCCAGGCCTGCCCTTGATTTGAT
TCTAACCAGAATTTCTTATTGGTGATGACTCCGCCTCGGGAGGGCCTTTC
TCCAGGGAGAGGGGAACGAATTTAGGGGCGGTATACTTCCCCTTTTCTTG
CCGTCTGGAACCTCTGGAAAGGGCAAATGGTAATTCCCCTTGTTCATTTT
CCTCCGGGTCCCTTTCAAAAAAAACCCAAAGGTCTCCCTCTTTTGTTTTT
TTGGGGGGTTCCCCCCAGGGAAACCGCCCCCCTCTCCCCAAAACCCCCCT
GGGCTTTTTTACCCCCCCTCTGGGGGGGGAAGCGTTTGTTCCCAAAAGTG
GGGACCCCCCTTTCTGCGGCTCTTTTAACCGGTAAAAAA
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