DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 7.557e-45
Identity = 90/181 (49.72%), Postives = 124/181 (68.51%), Query Frame = 1
Query:  109 SDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 648
            ++  G  SG+TACV ++  + +IVANAGDSR V+ R G+A +LS DHKP+ E E  RI  AGG I  GRVNG LNL+RA GD  +K+N+ L  ++Q++TA PD+    L  +D+F+V+ACDGIW+ M SQQ+VDF+ + L   S  + VC+ + + CLA ST G G GCDNMT+I   F +
Sbjct:  308 AEVPGEDSGTTACVCLVGKDKVIVANAGDSRAVLCRNGKAVDLSVDHKPEDEVETNRIHAAGGQIEDGRVNGGLNLSRAFGDHAYKKNQELGLKEQMITALPDVKIEALTPEDEFIVVACDGIWNSMESQQVVDFVRDLLAKGSSCAEVCDALCDACLADSTDGDGTGCDNMTVICTTFDR 488          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.199e-44
Identity = 94/179 (52.51%), Postives = 123/179 (68.72%), Query Frame = 1
Query:  112 DFAGPTSGSTACVAIIRNNHLIV-ANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAP-STAGGEGCDNMTMIIVQF 642
            D     SG TA  A+I ++ +I  ANAGDSR V+ RKG A  LS DHKP+ + EK RI  AGGFI  GRVNGSL L+RAIGD E+K++  L  EKQIVTA PD+    +  DD+F++LACDGIWDC SSQQ+V+F+   + +   +  +CE +++RC+A  S + G GCDNMT+ IV F
Sbjct:  113 DMQEDPSGCTATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKPNNDVEKARITAAGGFIDFGRVNGSLALSRAIGDFEYKKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLILACDGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASNSESCGIGCDNMTICIVAF 291          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.431e-43
Identity = 93/170 (54.71%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPST-AGGEGCDNMTMIIV 636
            SG TA V +   N L  ANAGDSR V+  KG A  LS DHKP  EAEK RI  AGGF+  GRVNG+L L+RAIGD EFK N  L  EKQIVTA PD+   E+ DDD+FVVLACDGIWDC +SQQ+++F+   + + + +  + E +++ C+A  T   G GCDNMT+ IV
Sbjct:  118 SGCTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKPSNEAEKARICAAGGFVDFGRVNGNLALSRAIGDFEFK-NSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIV 286          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.742e-41
Identity = 79/172 (45.93%), Postives = 123/172 (71.51%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            +G TA VA+I    L VANAGDSR  ++R G+ +++S+DHKPD E EK+RI +AGGF+  GRVNG+L+L+RA+GD+E+K++     E+QI+TA PD+   +L   D F+++ CDG+++    QQ+++FI+ +L +   +    E++L++ LA  T+ G GCDNMT I++QFK
Sbjct:  124 AGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDEQEKKRIERAGGFVSDGRVNGNLSLSRALGDLEYKKDNRFKPEEQIITALPDVKVTQLSAADKFLLMGCDGVFETWDHQQILNFINSELKNTQNLQKAAEKLLDQLLAKDTSLGTGCDNMTCILIQFK 295          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 2.275e-41
Identity = 86/170 (50.59%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPS-TAGGEGCDNMTMIIV 636
            SG+TA V +I+   +   NAGDSR V S  G+A  LS DHKP  E E  RI+ AGG++   RVNG+L L+RA+GD  FK      AE+QIVTA PD+ + +L  D +F+VLACDGIWD M++Q++VDF+ E+L  +    ++CE +L RCLAP    GG GCDNMT+++V
Sbjct:  115 SGTTAVVVLIKEGDVYCGNAGDSRAVSSVVGEARPLSFDHKPSHETEARRIIAAGGWVEFNRVNGNLALSRALGDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVREKLAEKRDPQSICEELLTRCLAPDCQMGGLGCDNMTVVLV 284          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 167.548 bits (423), Expect = 1.475e-40
Identity = 81/184 (44.02%), Postives = 125/184 (67.93%), Query Frame = 1
Query:  115 FAGPTS-GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIH----AGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 651
            + GP + G TACV +IRN  ++V NAGD+RCVISR GQA  LS DHKP+   E +RI+ AGG +     + RVN  + ++RAIGD+ +K NK L  E+Q++T +P+I + +L DD +F+V+ACDG+WD +++Q +VDF+   L++  ++S +CE +L+  +   T      DNM++I+V+F  P
Sbjct:  144 YCGPLAEGCTACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAI---TRDPPSTDNMSVILVRFLHP 324          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.285e-40
Identity = 76/172 (44.19%), Postives = 122/172 (70.93%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            +G TA VA+I    L VANAGDSR  ++R G+ +++S+DHKPD + EK+RI +AGGF+  GR NG+L+L+RA+GD+E+K++     E+QI++A PD+   +L   D F+++ CDG+++    QQ+++F++++L S   +    E++L++ LA  T+ G GCDNMT I+V FK
Sbjct:  124 AGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDDQEKKRIERAGGFVSDGRANGNLSLSRALGDLEYKKDSRFKPEEQIISALPDVKVTQLTASDKFLLMGCDGVFETWDHQQILNFVNQELKSSQNLQKATEKLLDQLLAKDTSLGTGCDNMTCILVLFK 295          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C2_YEAST (Protein phosphatase 2C homolog 2 OS=Saccharomyces cerevisiae GN=PTC2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.631e-39
Identity = 87/177 (49.15%), Postives = 114/177 (64.41%), Query Frame = 1
Query:  130 SGSTACVAIIRN--NHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVEL-CDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 648
            SG TA   ++    N L+  NAGDSR V++  G A  LS DHKP L +EK RI+ A GF+   RVNG+L L+RAIGD EFK N  L  E+QIVT  PDI    L  D D+FV+LACDGIWDC++SQ  VD +H  L     ++ +  R+++ C AP+T G G GCDNM++++V   K
Sbjct:  118 SGCTATSILVSKSQNLLVCGNAGDSRTVLATDGNAKALSYDHKPTLASEKSRIVAADGFVEMDRVNGNLALSRAIGDFEFKSNPKLGPEEQIVTCVPDILEHSLDYDRDEFVILACDGIWDCLTSQDCVDLVHLGLREGKTLNEISSRIIDVCCAPTTEGTGIGCDNMSIVVVALLK 294          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C4_PARTE (Probable protein phosphatase 2C 4 OS=Paramecium tetraurelia GN=GSPATT00020181001 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.632e-39
Identity = 80/176 (45.45%), Postives = 118/176 (67.05%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE----SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            +G TA VA+   N L VANAGDSR V+ R    Y++S DHKPD   EK RI +AGGF+  GRVNG+LNL+RA+GD+E+K++  L + +Q++ A PDI  VEL   D F+++ CDG+++ +  Q L+ FI+++L ++      +  V E +L+  +AP T+ G GCDNMT +I+  K
Sbjct:  124 AGCTANVALFHKNVLYVANAGDSRSVLCRNNTNYDMSVDHKPDNYEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKRDSKLRSNEQLIIALPDIKKVELNQTDKFLLMGCDGVFETLDHQDLLKFINQKLGNQQITPQLLGRVAEDLLDNLIAPDTSAGTGCDNMTTLIIYLK 299          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C3_PARTE (Probable protein phosphatase 2C 3 OS=Paramecium tetraurelia GN=GSPATT00031056001 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.632e-39
Identity = 80/177 (45.20%), Postives = 118/177 (66.67%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH----SESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 648
            +G TA VA+I  N L VANAGDSR V+ R    +++S DHKPD   EK RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L   +Q++ A PD+   EL   D F+++ CDG+++ ++ Q+L+  ++  L     +E+ +S   E +L++ LAP T+ G GCDNMT I+V  KK
Sbjct:  124 AGCTANVALIHKNTLYVANAGDSRSVLCRNNTNFDMSVDHKPDNNEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLKK 300          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PP2C1_CAEEL7.557e-4549.72Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]
PP2C2_SCHPO2.199e-4452.51Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
PP2C3_SCHPO2.431e-4354.71Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
PP2C6_PARTE1.742e-4145.93Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
PP2C2_CAEEL2.275e-4150.59Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]
P2C42_ORYSJ1.475e-4044.02Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
PP2C5_PARTE3.285e-4044.19Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
PP2C2_YEAST1.631e-3949.15Protein phosphatase 2C homolog 2 OS=Saccharomyces ... [more]
PP2C4_PARTE3.632e-3945.45Probable protein phosphatase 2C 4 OS=Paramecium te... [more]
PP2C3_PARTE3.632e-3945.20Probable protein phosphatase 2C 3 OS=Paramecium te... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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