DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: CYAA_USTMA (Adenylate cyclase OS=Ustilago maydis GN=UAC1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.433e-12
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKG-QAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQ 525
            +G++A +A + ++ L +ANAGD+  V+SR G  A+ +S  H+P   AE ERI  A G++   G VN  L+++R+ G               IV A P + +V+L D D+FV++A   +W  +S Q  VD    Q
Sbjct: 1845 AGASAILAYVVDHTLYIANAGDALAVMSRNGGTAHLISNKHEPFDRAEIERIRSAEGWVSLRGYVNDMLDVSRSFGYFHLFP---------IVNAAPAVTTVQLTDSDEFVIIANRTLWQYVSYQTAVDIARTQ 1969          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C67_ARATH (Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.101e-11
Identity = 49/178 (27.53%), Postives = 82/178 (46.07%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQ----AYNLSRDHKPDLEAEKERILKAGGFIHAG------------RVNGSLNLARAIGDMEFKQNKFLSAE------------KQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCL 582
            GS     +I N  + +AN GDSR V+ R  +    A  LS +H  +LE+ ++ +      +H              RV G + + R+IGD   K+ +F                K I++A+P +    L   D+F++LA DG+W+ +S+Q+ VD +H      S    +  R+L+  L
Sbjct:  140 GSCCLAGVICNGLVYIANTGDSRAVLGRSERGGVRAVQLSVEHNANLESARQELWS----LHPNDPTILVMKHRLWRVKGVIQVTRSIGDAYLKRAEFNREPLLPKFRLPEHFTKPILSADPSVTITRLSPQDEFIILASDGLWEHLSNQEAVDIVH-----NSPRQGIARRLLKAAL 308          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C66_ORYSJ (Probable protein phosphatase 2C 66 OS=Oryza sativa subsp. japonica GN=Os08g0500300 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.185e-11
Identity = 57/198 (28.79%), Postives = 88/198 (44.44%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSR-----DHKPDLEAEKERILKAGGFIHA-------GRV------NGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPS------TAGGEGCDNMTMIIVQFKKP 651
            SGSTA   + +   L+V N GDSR ++  +  A NL+      D KP+L  E  RI +  G + A        RV      +  L +ARA GD   K    +S         P I+   L + D+F++LA DG+WD +S+++ VD +     + +   A   R L  C   S      T+  + C  + + +   K P
Sbjct:  223 SGSTAVTLVKQGLDLVVGNLGDSRAIMGTRDAANNLTAVQLTVDLKPNLPREAARIQQCRGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDYGLISV--------PQISYRRLTEKDEFIILATDGVWDVLSNKEAVDIV-----AAAPSRATAARALVDCAVRSWRLKFPTSKSDDCAVVCLFLDHAKSP 407          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: CYAA_YEAST (Adenylate cyclase OS=Saccharomyces cerevisiae GN=CYR1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.185e-11
Identity = 39/137 (28.47%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  115 FAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYN-LSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHE 522
            +A   SG+ + V  IR   L  AN GD   ++S+    Y  L++ H P    E ERI  +GG+++ G+++G ++++RA+G  +   +         + A+PDI+ V L   D+ +++A   +W+ M    + D   E
Sbjct: 1465 YADLLSGACSTVIYIRGKKLFAANLGDCMAILSKNNGDYQTLTKQHLPTKREEYERIRISGGYVNNGKLDGVVDVSRAVGFFDLLPH---------IHASPDISVVTLTKADEMLIVATHKLWEYMDVDTVCDIARE 1592          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C52_ARATH (Probable protein phosphatase 2C 52 OS=Arabidopsis thaliana GN=At4g03415 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.466e-11
Identity = 47/147 (31.97%), Postives = 69/147 (46.94%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQ-----AYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGS-------------LNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFI 516
            SGST    + + ++L + N GDSR ++  K       A  L+ D KPDL  E ERI +  G + A                   L +ARA GD   K+   +S         P+     L D D F+VLA DG+WD +S++++VD +
Sbjct:  194 SGSTGVTILKQGSNLFMGNIGDSRAILGSKDSNDSMVATQLTVDLKPDLPREAERIKRCKGRVFAMEDEPEVPRVWLPYDDAPGLAMARAFGDFCLKEYGVISV--------PEFTHRVLTDRDQFIVLASDGVWDVLSNEEVVDIV 332          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C61_ARATH (Probable protein phosphatase 2C 61 OS=Arabidopsis thaliana GN=At4g32950 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.139e-11
Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVI---SRKGQAY--NLSRDHKPDLEAEKERILKAGGFI-------HAGRV------NGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCE 561
            SG+TA +A+   N ++VAN GDSR V+   S  G+     L+ D KP + +E ERI K  G +       H  RV         L ++RA GD   K           V A P +++ ++   D F++LA DG+WD +S++++   + +        + V E
Sbjct:  138 SGTTAVLAVKHGNQVMVANLGDSRAVMIGTSEDGETKVAQLTNDLKPSVPSEAERIRKRNGRVLALESEPHILRVWLPTENRPGLAMSRAFGDFLLKSYG--------VIATPQVSTHQITSSDQFLLLASDGVWDVLSNEEVATVVMKSASEAGAANEVAE 291          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
CYAA_USTMA8.433e-1235.07Adenylate cyclase OS=Ustilago maydis GN=UAC1 PE=3 ... [more]
P2C67_ARATH1.101e-1127.53Probable protein phosphatase 2C 67 OS=Arabidopsis ... [more]
P2C66_ORYSJ4.185e-1128.79Probable protein phosphatase 2C 66 OS=Oryza sativa... [more]
CYAA_YEAST4.185e-1128.47Adenylate cyclase OS=Saccharomyces cerevisiae GN=C... [more]
P2C52_ARATH5.466e-1131.97Probable protein phosphatase 2C 52 OS=Arabidopsis ... [more]
P2C61_ARATH7.139e-1130.25Probable protein phosphatase 2C 61 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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