DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C21_ORYSJ (Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica GN=Os02g0606900 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.075e-38
Identity = 82/180 (45.56%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  112 DFAGPT-SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH-SESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            D+  P+  GSTACV IIR N +IV N GDSRCV+S+ GQA +LS DHKP  EAE+ERI +AGG +   R+ G L  +RAIGD  +KQN+ +   +Q+VT  PDI    + DD +F+V+A DG+WD M +  +V F+ ++L   E  +   CE+++  CL  +       DN T I+V+FK
Sbjct:  134 DYVPPSYEGSTACVVIIRGNQIIVGNVGDSRCVLSKNGQAISLSFDHKPHHEAERERIQRAGGHVFLQRILGMLATSRAIGDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWDGMRNNNVVQFVRQELRPGEENLRETCEKLVGHCLHSN-------DNATAILVKFK 306          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C2_PARTE (Probable protein phosphatase 2C 2 OS=Paramecium tetraurelia GN=GSPATT00030171001 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.016e-38
Identity = 81/177 (45.76%), Postives = 116/177 (65.54%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH----SESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 648
            +G TA VA+I  N L VANAGDSR V+ R    Y++S DHKPD   EK RI +AGGF+  GRVNG+LNL+RA+GD+E+K++  L   +Q++ A PD+  VEL   D F++L CDG+++ ++   L+  ++  L     +E  +    E +L++ LAP T+ G GCDNMT I+V  KK
Sbjct:  124 AGCTANVALIYKNTLYVANAGDSRTVLCRNNANYDMSVDHKPDNPEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKRDSKLRVNEQLIIAIPDVKKVELGPQDKFLLLGCDGVFETLNHMDLLKQVNSTLGQAQVTEELLRKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLKK 300          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C1_PARTE (Protein phosphatase 2C 1 OS=Paramecium tetraurelia GN=GSPATT00029903001 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.993e-37
Identity = 76/177 (42.94%), Postives = 118/177 (66.67%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH----SESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 648
            +G TA VA+I  N L VANAGDSR V+ R    +++S DHKPD   EK RI +AGGF+  GRVNG+LNL+RA+GD+E+K++  L + +Q++ A PD+   EL   D F+++ CDG+++ ++ Q+L+  ++  +     +E  +    E +L++ LAP T+ G GCDNMT I+V  ++
Sbjct:  124 AGCTANVALIYKNTLYVANAGDSRSVLCRNNTNHDMSVDHKPDNPEEKSRIERAGGFVSDGRVNGNLNLSRALGDLEYKRDNKLRSNEQLIIALPDVKKTELTPQDKFILMGCDGVFETLNHQELLKQVNSTIGQAQVTEELLKKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLRR 300          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C3_YEAST (Protein phosphatase 2C homolog 3 OS=Saccharomyces cerevisiae GN=PTC3 PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 7.574e-37
Identity = 85/178 (47.75%), Postives = 115/178 (64.61%), Query Frame = 1
Query:  130 SGSTACVAIIRN--NHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVEL-CDDDDFVVLACDGIWDCMSSQQLVDFIHEQL-HSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 648
            SG TA V ++      LI AN+GDSR V+S  G +  +S DHKP L +EK RI+ A GF+   RVNG+L L+RAIGD EFK N  L   +Q+VT  PDI    L  D+D+FV+LACDGIWDC++SQ+ VD +H  +      +S +  R+++ C +P+T G G GCDNM++ IV   K
Sbjct:  118 SGCTATVILVSQLKKLLICANSGDSRTVLSTGGNSKAMSFDHKPTLLSEKSRIVAADGFVEMDRVNGNLALSRAIGDFEFKSNTKLGPHEQVVTCVPDIICHNLNYDEDEFVILACDGIWDCLTSQECVDLVHYGISQGNMTLSDISSRIVDVCCSPTTEGSGIGCDNMSISIVALLK 295          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C20_ORYSJ (Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica GN=Os02g0600000 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.478e-32
Identity = 79/200 (39.50%), Postives = 120/200 (60.00%), Query Frame = 1
Query:  103 PHSDFAGPT-SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHA-------GR-----------VNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            P + +  P+  GSTACV +IR + LIV +AGDSRCV+SR GQA  LS DHKPD E+E+ER+  AGG           GR             G ++++R+IGD   K+N+ L  E Q++T NPDI ++++ DD +F+V+A +G+W  M++Q +VD  H++L   ++   +CE +++        G    DN T+I+V FK
Sbjct:  182 PQATYTAPSYEGSTACVVVIRGDQLIVGHAGDSRCVLSRNGQASALSVDHKPDSESERERVQNAGGVAVGYSYRKIMGRWVTKKQWGFTDFKGRVSISRSIGDFACKKNERLPPEDQMLTCNPDILTMDITDDMEFLVIATEGLWCNMTNQNVVDHTHDRLLEGAEARVICEELVQ-------FGLPSGDNTTVILVLFK 374          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C16_ORYSJ (Probable protein phosphatase 2C 16 OS=Oryza sativa subsp. japonica GN=Os02g0598400 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.301e-32
Identity = 81/204 (39.71%), Postives = 120/204 (58.82%), Query Frame = 1
Query:  103 PHSDFAGPT-SGSTACVAIIRNNHLIVANAGDSRCVISRKGQ-AYNLSRDHKP--DLEAEKERILKAGGFIHA------------------GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE-SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            P + + GP   GSTACV +IR N +IV + GDSRCV+SR+G  A +LS DHKP    E+E+ER+  AGG                      G   G + ++R+IGD  FK+NK L  EKQ++  +PDI + ++ DD +F+V+A  G+W C+ S  +V +IH++L  E +++  +CE V+E  LA         +N T+I+VQFK
Sbjct:  132 PQATYTGPAYEGSTACVVVIRGNQMIVGHVGDSRCVLSRQGGLAIDLSFDHKPCTRTESERERVQNAGGRSLGLRCEQVMGNYVVKEQWVLGDFGGGVTISRSIGDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLWSCVDSADVVSYIHDRLSVEGAELRVICEEVVEFGLASG-------ENTTVILVQFK 328          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C18_ORYSJ (Probable protein phosphatase 2C 18 OS=Oryza sativa subsp. japonica GN=Os02g0599200 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 3.641e-31
Identity = 80/210 (38.10%), Postives = 121/210 (57.62%), Query Frame = 1
Query:   79 NDWAFEEGPHSDFAGPT-SGSTACVAIIRNNHLIVANAGDSRCVISRKGQ-AYNLSRDHKPDL-EAEKERILKAGGFIHA------------------GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            N W F +     + GP   GSTACV +IR + +IV +AGDSRCV+SR+G  A +LS DHKP   E+E+ER+  AGG                      G    S+ ++R+IGD  FKQNK L+ E+Q++  +PDI++ ++  D +F+V+A  G+W CM S  +V +IH +L    ++  +CE +++  LA         +N T+I+VQFK
Sbjct:  237 NFWPFPQA----YTGPAYEGSTACVVVIRGDQMIVGHAGDSRCVLSRQGGLAIDLSSDHKPRTSESERERVQNAGGISLGVDCEKVMENYVIKEQWILGYFGESVTISRSIGDFAFKQNKDLNREEQMLICDPDIHTHDITGDMEFLVIASQGLWSCMESADVVAYIHVRLLEGVELRVICEELVQSGLASG-------ENTTVILVQFK 435          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.384e-30
Identity = 69/171 (40.35%), Postives = 104/171 (60.82%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   +I   H+   N GDSR V+ R GQ    ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P++  +   ++D+FVVLACDGIWD MS+++L +F++ +L     +  VC  V++ CL   +      DNM++++V F
Sbjct:  130 SGSTAVGVMISPTHIYFINCGDSRAVLCRNGQVCFSTQDHKPCNPMEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWDVMSNEELCEFVNSRLEVSDDLENVCNWVVDTCLHKGSR-----DNMSIVLVCF 295          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1B_MOUSE (Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.807e-30
Identity = 68/171 (39.77%), Postives = 103/171 (60.23%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   ++   H+   N GDSR V+ R GQ    ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P++  +   ++D+FVVLACDGIWD MS+++L +F+  +L     +  VC  V++ CL   +      DNM++++V F
Sbjct:  130 SGSTAVGVMVSPTHMYFINCGDSRAVLCRNGQVCFSTQDHKPCNPVEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSR-----DNMSVVLVCF 295          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.082e-30
Identity = 67/172 (38.95%), Postives = 103/172 (59.88%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   +I   H    N GDSR ++ R  + Y  ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVYFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
P2C21_ORYSJ3.075e-3845.56Probable protein phosphatase 2C 21 OS=Oryza sativa... [more]
PP2C2_PARTE4.016e-3845.76Probable protein phosphatase 2C 2 OS=Paramecium te... [more]
PP2C1_PARTE1.993e-3742.94Protein phosphatase 2C 1 OS=Paramecium tetraurelia... [more]
PP2C3_YEAST7.574e-3747.75Protein phosphatase 2C homolog 3 OS=Saccharomyces ... [more]
P2C20_ORYSJ1.478e-3239.50Probable protein phosphatase 2C 20 OS=Oryza sativa... [more]
P2C16_ORYSJ4.301e-3239.71Probable protein phosphatase 2C 16 OS=Oryza sativa... [more]
P2C18_ORYSJ3.641e-3138.10Probable protein phosphatase 2C 18 OS=Oryza sativa... [more]
PPM1B_RAT1.384e-3040.35Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
PPM1B_MOUSE1.807e-3039.77Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE... [more]
PPM1A_BOVIN3.082e-3038.95Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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