DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 5.257e-30
Identity = 67/171 (39.18%), Postives = 103/171 (60.23%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   +I   H+   N GDSR V+ R GQ    ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P++  +   ++D+F++LACDGIWD MS+++L +F+  +L     +  VC  V++ CL   +      DNM++++V F
Sbjct:  130 SGSTAVGVMISPKHIYFINCGDSRAVLYRSGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSR-----DNMSIVLVCF 295          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.257e-30
Identity = 72/187 (38.50%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   82 DWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            D+ F +    D +   SG+TA  A I    LI+ANAGD R V+ R+G+A  LS+DHKP+  AEK RI K GG ++ G +NG L++ARAIGD   K  K  +     ++  P++   +L +DD+F+++ CDG+WD MSSQ  V    ++L   +        ++   L  +T     CDN+T+I+V F
Sbjct:  169 DYEFADDSSLDIS---SGTTALTAFIFGRRLIIANAGDCRAVLGRRGRAIELSKDHKPNCTAEKVRIEKLGGVVYDGYLNGQLSVARAIGDWHMKGPKGSACP---LSPEPELQETDLSEDDEFLIMGCDGLWDVMSSQCAVTIARKELMIHNDPERCSRELVREALKRNT-----CDNLTVIVVCF 344          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C17_ORYSJ (Probable protein phosphatase 2C 17 OS=Oryza sativa subsp. japonica GN=Os02g0599150 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 6.867e-30
Identity = 79/196 (40.31%), Postives = 118/196 (60.20%), Query Frame = 1
Query:  103 PHSDFAGPT-SGSTACVAIIRNNHLIVANAGDSRCVISRKGQ-AYNLSRDHKP--DLEAEKERILKAGGF---IHAGRVNGSLNLARAI-------GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE-SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            P + + GP   GSTACV +IR N +IV + GDSRCV+SR+G  A +LS DHKP    E+E+ER+  AGG    +   +V G+  +           GD  FK+NK L  EKQ++  +PDI + ++ DD +F+V+A  G+W C+ S  +V +IH++L  E +++  +CE V+E  LA         +N T+I+VQFK
Sbjct:  156 PQATYTGPAYEGSTACVVVIRGNQMIVGHVGDSRCVLSRQGGLAIDLSFDHKPCTRTESERERVQNAGGRSLGLRCEQVMGNYVVKEQWVLGDFGGGDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLWSCVDSADVVSYIHDRLSVEGAELRVICEEVVEFGLASG-------ENTTVILVQFK 344          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.171e-29
Identity = 66/171 (38.60%), Postives = 103/171 (60.23%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   +I   H+   N GDSR V+ R GQ    ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P++  +   ++D+F++LACDGIWD MS+++L +++  +L     +  VC  V++ CL   +      DNM++++V F
Sbjct:  130 SGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSR-----DNMSIVLVCF 295          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.171e-29
Identity = 66/172 (38.37%), Postives = 103/172 (59.88%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   +I   H    N GDSR ++ R  + +  ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.171e-29
Identity = 66/172 (38.37%), Postives = 103/172 (59.88%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   +I   H    N GDSR ++ R  + +  ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.171e-29
Identity = 66/172 (38.37%), Postives = 103/172 (59.88%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   +I   H    N GDSR ++ R  + +  ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.171e-29
Identity = 66/172 (38.37%), Postives = 103/172 (59.88%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDD-FVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            SGSTA   +I   H    N GDSR ++ R  + +  ++DHKP    EKERI  AGG +   RVNGSL ++RA+GD ++K        +Q+V+  P+++ +E  ++DD F++LACDGIWD M +++L DF+  +L     +  VC  V++ CL   +      DNM++I++ F
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR-----DNMSVILICF 291          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.885e-28
Identity = 61/172 (35.47%), Postives = 107/172 (62.21%), Query Frame = 1
Query:  127 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +SG+TA  A+I +  +++ANAGDSR V+ ++G+A  LS+DHKP+  +E+ RI K GG I+ G +NG L++ARA+GD   K  K        ++  P++  + L ++D+++++ CDG+WD MSSQ  V  +  +L   +      + +++  L  ++     CDN+T+++V F
Sbjct:  164 SSGTTALTALILDKTMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGTK---GSLCPLSCEPELEEIVLTEEDEYLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPERCSQALVKEALQRNS-----CDNLTVVVVCF 327          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.885e-28
Identity = 69/175 (39.43%), Postives = 100/175 (57.14%), Query Frame = 1
Query:  127 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERC---LAPSTAGGEGCDNMTMIIVQF 642
            +SG+TA  A+I    L+VANAGD R V+ RKG A  +SRDH+P  +AE ERI + GG+I  G +NG L++ RA+GD + K  +     +  + A P+     L +DD+F+++ CDGIWD MSSQ  V  + + L              ERC   LA      +  DN+T+I++ F
Sbjct:  176 SSGTTALAALIFGRQLLVANAGDCRAVLCRKGVAVEMSRDHRPTYDAEHERITECGGYIEDGYLNGVLSVTRALGDWDMKMPQ---GSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVRKGLRRHDD--------PERCARELAMEAKRLQTFDNLTVIVICF 339          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PPM1B_BOVIN5.257e-3039.18Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]
P2C27_ARATH5.257e-3038.50Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C17_ORYSJ6.867e-3040.31Probable protein phosphatase 2C 17 OS=Oryza sativa... [more]
PPM1B_HUMAN1.171e-2938.60Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
PPM1A_RAT1.171e-2938.37Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_RABIT1.171e-2938.37Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_MOUSE1.171e-2938.37Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
PPM1A_HUMAN1.171e-2938.37Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
P2C47_ARATH2.885e-2835.47Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
P2C02_ORYSJ2.885e-2839.43Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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