DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C43_ARATH (Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.353e-24
Identity = 58/172 (33.72%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQL--HSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            G+TA  A++   HL+VAN GD R V+ RKG+A ++S DHK   E E+ R+   GG+     + G L + RA+GD   K+   L      + ++PDI  + L ++D+F+++ CDG+WD M+SQ  V F+ + L  H + +  A+        L       +  DN+T++++ F
Sbjct:  229 GTTALTALVIGRHLMVANVGDCRAVLCRKGKAVDMSFDHKSTFEPERRRVEDLGGYFEGEYLYGDLAVTRALGDWSIKRFSPLGESLSPLISDPDIQQMILTEEDEFLIMGCDGVWDVMTSQYAVTFVRQGLRRHGDPRRCAM-------ELGREALRLDSSDNVTVVVICF 393          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.604e-24
Identity = 69/174 (39.66%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +GSTA  AI+  + L+VAN GDSR VI R G A+ +SRDHKPD   E+ERI  AGGF+  AG  RV G L ++RA GD            KQ V A+P+I   ++ D  +F++LA DG+WD  S+++ V  + E    E     +    ++R  A         DN+T ++V+F
Sbjct:  124 AGSTASTAILVGDRLLVANVGDSRAVICRGGNAFAVSRDHKPDQSDERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLL---------KQYVVADPEIQEEKIDDSLEFLILASDGLWDVFSNEEAVAVVKEVEDPEESTKKLVGEAIKRGSA---------DNITCVVVRF 279          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.604e-24
Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +GSTA  AI+  + L+VAN GDSR VISR G+A  +SRDHKPD   E+ERI  AGGF+  AG  RV G L ++RA GD            KQ V A+P+I   ++ D  +F++LA DG+WD  S++  V  + E    E     +    ++R  A         DN+T ++V+F
Sbjct:  124 AGSTASTAILVGDRLVVANVGDSRAVISRGGKAIAVSRDHKPDQSDERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLL---------KQYVVADPEIQEEKIDDTLEFLILASDGLWDVFSNEAAVAMVKEVEDPEDSAKKLVGEAIKRGSA---------DNITCVVVRF 279          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C22_ORYSJ (Putative protein phosphatase 2C 22 OS=Oryza sativa subsp. japonica GN=Os02g0607500 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 9.604e-24
Identity = 81/253 (32.02%), Postives = 114/253 (45.06%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGR------------------VNGSLNLARAI---------GDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIW----------------DCMSSQQLVDFIHEQLHS---------------------------------------ESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            GSTACV IIR N + V N GDSRCV+S+ GQA +LS DHKP++  E++RIL+ GG +   +                  + G L+ +RA+         GD  +K N     + Q+VT  PDI   ++  D +F+V+A DGI                 D MSSQ +VDF+HE+L+S                                       E  +   CE+++E CL       E  +N T I+VQFK
Sbjct:  235 GSTACVVIIRGNQITVGNVGDSRCVLSKNGQAIDLSTDHKPNVPLERQRILRVGGQVWREKFPAKDSGGEIREQWGPYCIEGKLSTSRALAGIFLTTISGDFAYK-NIVYRPQYQMVTHFPDIRVAKITGDTEFLVIASDGICSIQILIVDLNTFFPFRDHMSSQDVVDFVHEKLNSRRQELCQSLINQGKKRECFTEDSQLATNKNIAPNTTTLGEETLHTTCEKLVENCL-------ESRNNATAILVQFK 479          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.638e-23
Identity = 61/171 (35.67%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            G+TA  A+I    L+VANAGD R V+ RKG+A ++S DHKP    E+ R+ ++GGFI + G +N  L + RA+GD +    K     +  + + P+I  + L +DD+F+V+ CDGIWD ++SQ+ V  +   L+  +  +     ++   L     G    DN+T ++V F
Sbjct:  187 GTTALTALICGRLLMVANAGDCRAVLCRKGRAIDMSEDHKPINLLERRRVEESGGFITNDGYLNEVLAVTRALGDWDL---KLPHGSQSPLISEPEIKQITLTEDDEFLVIGCDGIWDVLTSQEAVSIVRRGLNRHNDPTRCARELVMEAL-----GRNSFDNLTAVVVCF 349          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.139e-23
Identity = 70/174 (40.23%), Postives = 100/174 (57.47%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            GSTA  A++  NHL VAN GDSR VIS+ G+A  LS DHKP+   E++RI  AGG +  AG  RV G L ++RA G      N+ L   KQ V A+P+I   E+ D+ +F++LA DG+WD + ++  V  +  +   E+    + E    R        G G DN+T I+V+F+
Sbjct:  321 GSTASTAVLVGNHLYVANVGDSRAVISKAGKAIALSEDHKPNRSDERKRIESAGGVVMWAGTWRVGGVLAMSRAFG------NRLL---KQFVVADPEIQEQEIDDELEFLILASDGLWDVVPNEDAVSLVKIEEEPEAAARKLTETAFSR--------GSG-DNITCIVVKFQ 476          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 3.649e-23
Identity = 67/173 (38.73%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            GSTA  AI   NH+ VAN GDSR V+S+ G+A  LS DHKP+ + E++RI  AGG +      RV G L ++RA G      N+FL   K+ V A P++   E+ DD +F++LA DG+WD +S++  V F+  +   E+    + E    R            DN+T I+V+F
Sbjct:  207 GSTASTAIFVGNHIYVANVGDSRTVMSKAGKAIALSSDHKPNRKDERKRIENAGGVVTWSGTWRVGGVLAMSRAFG------NRFL---KRFVVAEPEVQEQEIDDDLEFLILASDGLWDVVSNEHAVAFVKAEEGPEAAARKLAEIAFAR---------GSTDNITCIVVKF 361          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.387e-22
Identity = 69/174 (39.66%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +GSTA  AI+  + L+VAN GDSR V+ R G A  +SRDHKPD   E++RI  AGGF+  AG  RV G L ++RA GD      K L   KQ V A+P+I    +    +F++LA DG+WD +S+++ VD +      E     + +   +R  A         DN+T++IV+F
Sbjct:  173 AGSTASTAILVGDRLLVANVGDSRAVVCRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD------KLL---KQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVRPIQDPEQAAKRLLQEAYQRGSA---------DNITVVIVRF 328          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.089e-22
Identity = 69/174 (39.66%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            +GSTA  AI+  + L+VAN GDSR VI R G A  +SRDHKPD   E++RI  AGGF+  AG  RV G L ++RA GD      K L   KQ V A+P+I    +    +F++LA DG+WD +++++ V  +   L SE     + +   +R  A         DN+T ++V+F
Sbjct:  155 AGSTASTAILVGDRLLVANVGDSRAVICRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD------KLL---KQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVKPILDSEQAAKKLLQEASQRGSA---------DNITCLVVRF 310          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C57_ARATH (Protein phosphatase 2C 57 OS=Arabidopsis thaliana GN=PPH1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 4.035e-22
Identity = 71/207 (34.30%), Postives = 102/207 (49.28%), Query Frame = 1
Query:   85 WAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEA-----EKERILKAGGFIHAGRVNGSLNLARAIGDMEFK----------------QNKFLSA---EKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMII 633
            W    G   D     SGSTA V IIRN+   +A+ GDS  V+SR GQ   L+  H+P   +     E +R+ +AGG+I  GR+ G + ++RA GD+ FK                  KF+S    +  +V A PDI  V L  D +F++LA DG+WD M S  +V ++ +QL     +   CE      LA         DN+++II
Sbjct:  148 WLEANGDEED----ESGSTATVMIIRNDVSFIAHIGDSCAVLSRSGQIEELTDYHRPYGSSRAAIQEVKRVKEAGGWIVNGRICGDIAVSRAFGDIRFKTKKNDMLKKGVDEGRWSEKFVSRIEFKGDMVVATPDIFQVPLTSDVEFIILASDGLWDYMKSSDVVSYVRDQLRKHGNVQLACE-----SLAQVALDRRSQDNISIII 345          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
P2C43_ARATH7.353e-2433.72Probable protein phosphatase 2C 43 OS=Arabidopsis ... [more]
P2C71_ARATH9.604e-2439.66Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C69_ARATH9.604e-2440.23Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C22_ORYSJ9.604e-2432.02Putative protein phosphatase 2C 22 OS=Oryza sativa... [more]
P2C49_ARATH1.638e-2335.67Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
P2C52_ORYSJ2.139e-2340.23Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C07_ORYSJ3.649e-2338.73Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
P2C10_ORYSJ1.387e-2239.66Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C59_ORYSJ3.089e-2239.66Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C57_ARATH4.035e-2234.30Protein phosphatase 2C 57 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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