DY258306

Overview
NameDY258306
Unique NameDY258306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1273
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258306_ssr438 microsatellite DY258306_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
DY258306_ssr5 microsatellite DY258306_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig31 contig Ccv1_Contig31:45..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.072e-18
Identity = 65/179 (36.31%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  133 GSTACVAIIRNN----HLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-----HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQF 642
            GSTA  AI+ ++    +L+VAN GDSR VIS+ G A  LS DH+P+   E+  I K GGF+        RV+G L +ARA GD   K  K LS+E       PD+    + ++ DF++LA DG+W  MS+Q+ VD I +   +++    + E+ + R         +  D+++ I+V+F
Sbjct:  130 GSTAVTAILISSENSVNLVVANVGDSRAVISKSGVAKQLSVDHEPN--KERHSIEKKGGFVSNLPGDVPRVDGQLAVARAFGDRSLK--KHLSSE-------PDVVEEPIDENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQAAAKHLTEQAVNR---------KSKDDISCIVVKF 288          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.072e-18
Identity = 62/181 (34.25%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  121 GPTSGSTACVAIIRNNH-LIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-----HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            GP  GSTA  AI+ +   + VAN GDSR V+  +G A  L+ DH+P    E++RI K GGF+        RVNG L +ARA GD   K +         +++ PD+  V +    +FV+LA DG+W  M +Q+ VD +     S     A  +R+    LA  +      D+++ I+++F+
Sbjct:  159 GP-GGSTAVTAIVVDGKDMWVANVGDSRAVVCERGAANQLTVDHEPHTTNERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAH---------LSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLV----KSIKDPQAAAKRLTTEALARKSK-----DDISCIVIRFR 320          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C14_ARATH (Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.072e-18
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 1
Query:  121 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI--HAG--RVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLV 507
            G  SG+    A+I++  +IV+N GD R V+ R G A  L+ DHKP  + EKERI   GG++  H G  RV G L ++R+IGD            K+ V A P+   +EL  D +F+VLA DG+WD +S+Q+ V
Sbjct:  207 GVVSGACCVTAVIQDQEMIVSNLGDCRAVLCRAGVAEALTDDHKPGRDDEKERIESQGGYVDNHQGAWRVQGILAVSRSIGDAHL---------KKWVVAEPETRVLELEQDMEFLVLASDGLWDVVSNQEAV 330          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C08_ARATH (Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.072e-18
Identity = 60/192 (31.25%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  121 GPTSGSTACVAIIRNNHLIVANAGDSRCVISRKG---------------QAYNLSRDHKPDLEAEKERILKAGGFIHA-GRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 648
            G   G+TA    I +  + VAN GD++ V++R                 +A  L+R+HK     E+ RI K+GG I + GR+ G L ++RA GD  FK        K  V+A PDI++ EL + ++F++L CDG+W+       V F+ + L     +S V  R+++  +          DN T I++ FK+
Sbjct:  171 GWQDGATAVCVWILDQKVFVANIGDAKAVLARSSTTNELGNHTEAGNPLKAIVLTREHKAIYPQERSRIQKSGGVISSNGRLQGRLEVSRAFGDRHFK--------KFGVSATPDIHAFELTERENFMILGCDGLWEVFGPSDAVGFVQKLLKEGLHVSTVSRRLVKEAVKERRCK----DNCTAIVIVFKR 350          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.706e-18
Identity = 65/178 (36.52%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  133 GSTACVAIIRN-NHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI-----HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDD-DFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            GSTA  AI+ N   L+VAN GDSR VI + G A  LS DH+P++  EK+ I   GGF+        RV+G L +ARA GD   K +  LS+E  +        +VE+ DDD +F++LA DG+W  MS+Q+ VD I     +++    + E  + R         +  D++++++V+F+
Sbjct:  133 GSTAVTAILINCQKLVVANVGDSRAVICQNGVAKPLSVDHEPNM--EKDEIENRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMH--LSSEPYV--------TVEIIDDDAEFLILASDGLWKVMSNQEAVDSIKGIKDAKAAAKHLAEEAVAR---------KSSDDISVVVVKFQ 289          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.706e-18
Identity = 56/155 (36.13%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  118 AGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFI---HAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQL---HSESKISAVCER 564
            A  T GSTA VA++ ++H++V+N GDSR V+ R  +A  LS DHKPD E E  RI  AGG +      RV G L ++R+IGD      ++L   K  V   P++  +    +D+ ++LA DG+WD M++Q++ +    ++   H ++    + ER
Sbjct:  321 ASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGD------RYL---KPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAER 466          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.535e-18
Identity = 60/180 (33.33%), Postives = 95/180 (52.78%), Query Frame = 1
Query:  133 GSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGG---FIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSE--SKISAVCERVLERCLAPSTAGGEG------CDNMTMIIVQ 639
            GSTA V+++    +IVAN GDSR V+ R G+A  LS DHKPD   E +RI  AGG   +    RV G L ++RAIGD         +  K  V + P++   +  + DDF++LA DG+WD +S++     +   L  +   ++S+  ER +    A +   G G      C+  ++++ +
Sbjct:  221 GSTAVVSVLTPEKIIVANCGDSRAVLCRNGKAIALSSDHKPDRPDELDRIQAAGGRVIYWDGPRVLGVLAMSRAIGD---------NYLKPYVISRPEVTVTDRANGDDFLILASDGLWDVVSNETACSVVRMCLRGKVNGQVSSSPEREMTGVGAGNVVVGGGDLPDKACEEASLLLTR 391          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.616e-18
Identity = 65/180 (36.11%), Postives = 100/180 (55.56%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRK-GQAYNLSRDHKPDLEAEKERILKAGGFIH---AGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCD-DDDFVVLACDGIWDCMSSQQLVDFIHEQL---HSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            +G+T  +A++ +  L VAN GDSR V+  K G A  LS DHKP    E++RI +AGGFI    + RV G L ++R++GD   K          +V  +PDI + +L     +F++LA DG+WD  S+++ V FI E+L   H  +K S V +     C           DN+T+++V+F+
Sbjct:  191 AGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKN-------LNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAK-SIVLQSFYRGC----------PDNITVMVVKFR 352          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.616e-18
Identity = 65/180 (36.11%), Postives = 100/180 (55.56%), Query Frame = 1
Query:  130 SGSTACVAIIRNNHLIVANAGDSRCVISRK-GQAYNLSRDHKPDLEAEKERILKAGGFIH---AGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCD-DDDFVVLACDGIWDCMSSQQLVDFIHEQL---HSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 645
            +G+T  +A++ +  L VAN GDSR V+  K G A  LS DHKP    E++RI +AGGFI    + RV G L ++R++GD   K          +V  +PDI + +L     +F++LA DG+WD  S+++ V FI E+L   H  +K S V +     C           DN+T+++V+F+
Sbjct:  191 AGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKN-------LNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAK-SIVLQSFYRGC----------PDNITVMVVKFR 352          
BLAST of DY258306 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.616e-18
Identity = 59/179 (32.96%), Postives = 87/179 (48.60%), Query Frame = 1
Query:  133 GSTACVAIIRNNH------LIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLSAEKQIVTANPDINSVELCD-DDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKK 648
            G TA VA  R         L  ANAGD+R V+ R G+A  LS DHK     E  R+ + GG +   R+NG L + RA+GD            K++V+A+P      + +  D+F ++ACDG+WD +S Q+ VDF+   +        + E  L+R            DN+T I+V   +
Sbjct:  165 GCTAAVAFFRYEKNRTRRVLYTANAGDARIVLCRDGKAIRLSYDHKGSDANESRRVTQLGGLMVQNRINGVLAVTRALGDTYL---------KELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQEAVDFVRNFVSPREAAVRLVEFALKRL---------STDNITCIVVNLTR 325          
The following BLAST results are available for this feature:
BLAST of DY258306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
P2C62_ORYSJ2.072e-1836.31Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C44_ORYSJ2.072e-1834.25Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C14_ARATH2.072e-1841.35Probable protein phosphatase 2C 14 OS=Arabidopsis ... [more]
P2C08_ARATH2.072e-1831.25Probable protein phosphatase 2C 8 OS=Arabidopsis t... [more]
P2C39_ARATH2.706e-1836.52Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C16_ARATH2.706e-1836.13Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
P2C78_ARATH3.535e-1833.33Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]
PPM1L_MOUSE4.616e-1836.11Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]
PPM1L_HUMAN4.616e-1836.11Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
PP2C1_SCHPO4.616e-1832.96Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE01FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258306 ID=DY258306; Name=DY258306; organism=Citrus clementina; type=EST; length=1273bp
GATAAAATAAATAAATTCACTGGCATGATAGAAGGGTTGATATGGTCTCC
AAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGG
GCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTT
GCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCG
ATGCGTGATATCTAGAAAGGGCCAGGCATATAATCTCTCAAGAGATCACA
AACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGATTT
ATACATGCAGGACGAGTCAATGGTAGTTTGAATCTTGCAAGAGCAATAGG
TGACATGGAATTCAAGCAGAACAAATTTTTGTCTGCTGAAAAGCAAATTG
TTACTGCCAATCCAGATATAAACTCTGTTGAGCTGTGTGATGATGATGAT
TTCGTTGTGCTGGCGTGTGATGGAATCTGGGATTGCATGTCAAGCCAGCA
ATTAGTAGATTTTATTCATGAACAACTACATTCGGAAAGCAAGATTTCTG
CTGTGTGCGAGAGAGTACTCGAGAGATGTTTGGCGCCATCAACAGCAGGA
GGTGAGGGATGTGACAACATGACCATGATCATAGTGCAGTTCAAGAAACC
AATCCAGTCCACTTCCTCCACTTCTAGTCAACAGTCCTTGGAATTCAAAT
CAGATGACTCAAGTCCACTACCCGAGGAAAGTGAATCAATGTAACCGCTG
TAATGTACCACTATGTCAGGCTGCACAATTCTGGTTCCTTTGCCCATAAG
AACATGCAAGAATCCCCTTCCTTTGAAAATTGGGAATCAAGACCTGTGTA
CCTGTAAATGGTCCACCCCTGAAAAAAAAAAAAAAAATAAATGAAATGTT
TACAAATTCCTTTGTTCTTGTTCCTGTTTGCCTTTTACTTTTAACAAACC
CCCATTTAAAACTTTCCAACTGTACAATTTTTTGAATTGCCTCACACCAA
ACCCACCCCCCCTCCTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCCCCCTTTTCCCTGTCAAAATTTGGCCATTTAAAAAAAAACCTTT
CTTTTTCAAATTTTTTTCCCACCAAAACGGCCCCCCAATCCCCCCAAAAA
AAAAAAAACATTTTTTTTTCCCCCCCCCCCCCCACAAAACCCCCCCCTCC
AAAGGGGGGGGACGGCACAAACATAACCGGGGGGGTCGCAAATATGCCTT
GTTCTTTTCTCCCGCCGCGCCCC
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