DY258338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_HELP2 (ATP synthase subunit beta OS=Helicobacter pylori (strain P12) GN=atpD PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 3.216e-53 Identity = 91/168 (54.17%), Postives = 110/168 (65.48%), Query Frame = 3 Query: 276 KGSIGQVCQVIGAVVDVRFDEGLPPILTAL----EVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 K G++ QV+G VVDV F+ LP I AL EV LVLEVA H+G VR IAMD TEGLVR Q V G I VPVG LGRI NV+GE ID LK PIHR+AP+F +Q+T+ ++ TGIKV+DLLAPY +GGK+GLFGGAGVGK ++ L+ Sbjct: 2 KAMEGKIIQVLGPVVDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGGNRVRAIAMDMTEGLVRNQVVKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSFEQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELI 169 HSP 2 Score: 67.0106 bits (162), Expect = 3.216e-53 Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+IMELI+NVA H G+SVFAGVGERT EGNDLY +M + GV++ Sbjct: 161 KTVIIMELIHNVAYKHNGYSVFAGVGERTREGNDLYFEMKEGGVLD 206
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_BUCAP (ATP synthase subunit beta OS=Buchnera aphidicola subsp. Schizaphis graminum GN=atpD PE=3 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 3.216e-53 Identity = 90/166 (54.22%), Postives = 118/166 (71.08%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKT-----EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G++ Q+IGAVVDV FD+ +P I ALEV + ++L+LEV Q +G G+VRTIAM T GL RG V++ G I VPVG+ TLGRI+NV+G+ ID KG LK Y IHR AP++ EQA+ Q+IL TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 5 GKIIQIIGAVVDVEFDQNSVPKIYNALEVKNKKIQLILEVQQQLGAGIVRTIAMGSTNGLKRGLIVIDLGHYIKVPVGQATLGRIINVLGKTIDNKGPLKNLDNSKLEYWEIHRSAPSYQEQASSQEILETGIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELI 170 HSP 2 Score: 57.3806 bits (137), Expect = 3.216e-53 Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVF GVGERT EGND Y +M V++ Sbjct: 162 KTVNMMELIRNIAIEHSGYSVFTGVGERTREGNDFYHEMKDSKVLD 207
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_SALG2 (ATP synthase subunit beta OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=atpD PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 3.216e-53 Identity = 86/161 (53.42%), Postives = 116/161 (72.05%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G++ QVIGAVVDV F + +P + ALEV + + +LVLEV Q +G G+VRTIAM ++GL RG V + PI VPVG+ TLGRIMNV+GEP+D KG++ E IHR AP++ E + Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 4 GKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNEKLVLEVQQQLGGGIVRTIAMGSSDGLSRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELI 164 HSP 2 Score: 60.4622 bits (145), Expect = 3.216e-53 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M VI+ Sbjct: 156 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVID 201
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_HAES1 (ATP synthase subunit beta OS=Haemophilus somnus (strain 129Pt) GN=atpD PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 3.216e-53 Identity = 87/163 (53.37%), Postives = 117/163 (71.78%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G++ Q+IGAV+DV F + +P + AL+V L LEV Q +G GVVR IA+ ++GL RG +V NTG+PI+VPVG TLGRIMNV+GEPIDEKG++ E IHR AP++ EQ+ ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 2 SAGKIIQIIGAVIDVEFPQNAVPKVYDALKVESG---LTLEVQQQLGGGVVRCIALGSSDGLKRGLKVENTGNPISVPVGTKTLGRIMNVLGEPIDEKGEIGAEETWAIHRAAPSYEEQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELI 161 HSP 2 Score: 60.4622 bits (145), Expect = 3.216e-53 Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M + V++ Sbjct: 153 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTESNVLD 198
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_VESOH (ATP synthase subunit beta OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=atpD PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 3.216e-53 Identity = 88/163 (53.99%), Postives = 114/163 (69.94%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 SIG++ Q+IGAV+DV F + +P I AL+V++ L LEV Q +G+ +VR IAM G+EGL RG V NTG PI VPVG TLGRIMNV+GEPID G++ E IHR AP + E A ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 2 SIGKITQIIGAVIDVEFSADNMPKIYDALKVLETG--LTLEVQQQLGDHIVRAIAMGGSEGLKRGLGVTNTGEPIKVPVGVKTLGRIMNVLGEPIDNAGEIGQEVDWTIHRSAPDYDELAPTTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 64.3142 bits (155), Expect = 3.216e-53 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A AH G+SVFAGVGERT EGND Y +M + V+N Sbjct: 154 KTVNMMELIRNIAIAHSGYSVFAGVGERTREGNDFYHEMKESNVLN 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_AZOC5 (ATP synthase subunit beta OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpD PE=3 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 3.362e-53 Identity = 107/165 (64.85%), Postives = 127/165 (76.97%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLLTMLQR 782 G++ QVIGAVVDV+FD LP IL ALE + RLVLEVAQH+GE VRTIAMD TEGLVRGQ V +TG PI VPVG TLGRIMNVIGE +DE G + E IH++AP++ EQ+TE ++LVTGIKVVDLLAPY +GGKIGLFGGAGVGK L+ L+ + + Sbjct: 6 GRITQVIGAVVDVQFDSHLPEILNALETTNQGNRLVLEVAQHLGENTVRTIAMDSTEGLVRGQAVEDTGGPIMVPVGEATLGRIMNVIGEAVDELGPVVGEAKRAIHQQAPSYSEQSTEAEMLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAK 170 HSP 2 Score: 76.2554 bits (186), Expect = 4.442e-13 Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGV-INLGEQQGEQ--QMCPLSKAKERSPLVALARGGPDWGLMLPKPFRE 1003 KTVLIMELINN+AKAHGG+SVFAGVGERT EGNDLY +M++ V ++ E G C L + P A AR GL + + FR+ Sbjct: 157 KTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESKVNVDPHENNGSSAGSKCALVYGQMNEPPGARARVALT-GLTVAEHFRD 246
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_LACRJ (ATP synthase subunit beta OS=Lactobacillus reuteri (strain JCM 1112) GN=atpD PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.191e-53 Identity = 94/166 (56.63%), Postives = 116/166 (69.88%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRF--DEGLPPILTALEVVDHSVR-LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G+V QVIG VVDV F DE LP I AL++ + + L EVA +G+GVVRTIAMDGT+GL RG V NTG+ I+VPVG TLGR+ NV+GEP+D + +PIHR+AP + + +IL TGIKV+DLLAPY RGGKIGLFGGAGVGK L+ L+ Sbjct: 2 SSGKVLQVIGPVVDVEFPLDEKLPEINDALKIKESDGKTLTTEVALELGDGVVRTIAMDGTDGLQRGMEVENTGASISVPVGDDTLGRVFNVLGEPVDNGPKFGPDAKRMPIHRDAPKYDDLNNATEILETGIKVIDLLAPYVRGGKIGLFGGAGVGKTVLIQELI 167 HSP 2 Score: 63.1586 bits (152), Expect = 4.191e-53 Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVI 874 KTVLI ELI+N+A+ H G SVF GVGERT EGND+Y +M GV+ Sbjct: 159 KTVLIQELIHNIAQGHNGISVFTGVGERTREGNDMYYEMKASGVL 203
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_LACRD (ATP synthase subunit beta OS=Lactobacillus reuteri (strain DSM 20016) GN=atpD PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.191e-53 Identity = 94/166 (56.63%), Postives = 116/166 (69.88%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRF--DEGLPPILTALEVVDHSVR-LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G+V QVIG VVDV F DE LP I AL++ + + L EVA +G+GVVRTIAMDGT+GL RG V NTG+ I+VPVG TLGR+ NV+GEP+D + +PIHR+AP + + +IL TGIKV+DLLAPY RGGKIGLFGGAGVGK L+ L+ Sbjct: 2 SSGKVLQVIGPVVDVEFPLDEKLPEINDALKIKESDGKTLTTEVALELGDGVVRTIAMDGTDGLQRGMEVENTGASISVPVGDDTLGRVFNVLGEPVDNGPKFGPDAKRMPIHRDAPKYDDLNNATEILETGIKVIDLLAPYVRGGKIGLFGGAGVGKTVLIQELI 167 HSP 2 Score: 63.1586 bits (152), Expect = 4.191e-53 Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVI 874 KTVLI ELI+N+A+ H G SVF GVGERT EGND+Y +M GV+ Sbjct: 159 KTVLIQELIHNIAQGHNGISVFTGVGERTREGNDMYYEMKASGVL 203
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_SYNJB (ATP synthase subunit beta OS=Synechococcus sp. GN=atpD PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 4.191e-53 Identity = 83/168 (49.40%), Postives = 115/168 (68.45%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 ++G + QVIG V+D F G LP I AL+V + V + EV Q +G+ VR +AM T+GLVRG V++TG+PITVPVG+ TLGRI NV+GEP+D+ ++ + + PIHR AP V+ + + TGIKV+DLLAP+++GGK+GLFGGAGVGK L+ L+ Sbjct: 10 NVGYITQVIGPVIDAEFPSGKLPEIYNALKVEGTTESGLKVNVTFEVQQLLGDNRVRAVAMSSTDGLVRGMPVVDTGAPITVPVGQPTLGRIFNVLGEPVDQGEPVQAQEFAPIHRSAPPLVDLTIKPEPFETGIKVIDLLAPFKKGGKVGLFGGAGVGKTVLIQELI 177 HSP 2 Score: 67.0106 bits (162), Expect = 4.191e-53 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTVLI ELI+N+A+ H G SVFAGVGERT EGNDLY +M + GV++ Sbjct: 169 KTVLIQELIHNIAEEHSGLSVFAGVGERTREGNDLYNEMKESGVLD 214
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_HELPY (ATP synthase subunit beta OS=Helicobacter pylori GN=atpD PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 4.192e-53 Identity = 90/168 (53.57%), Postives = 110/168 (65.48%), Query Frame = 3 Query: 276 KGSIGQVCQVIGAVVDVRFDEGLPPILTAL----EVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 K G++ QV+G VVDV F+ LP I AL EV LVLEVA H+G VR IAMD TEGLVR Q + G I VPVG LGRI NV+GE ID LK PIHR+AP+F +Q+T+ ++ TGIKV+DLLAPY +GGK+GLFGGAGVGK ++ L+ Sbjct: 2 KAMEGKIIQVLGPVVDVEFESYLPAIFEALDINFEVNGVQKSLVLEVAAHLGGNRVRAIAMDMTEGLVRNQVIKARGKMIEVPVGEEVLGRIFNVVGESIDNLEPLKPSLTWPIHRKAPSFEQQSTKTEMFETGIKVIDLLAPYSKGGKVGLFGGAGVGKTVIIMELI 169 HSP 2 Score: 67.0106 bits (162), Expect = 4.192e-53 Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+IMELI+NVA H G+SVFAGVGERT EGNDLY +M + GV++ Sbjct: 161 KTVIIMELIHNVAYKHNGYSVFAGVGERTREGNDLYFEMKEGGVLD 206 The following BLAST results are available for this feature:
BLAST of DY258338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258338 ID=DY258338; Name=DY258338; organism=Citrus clementina; type=EST; length=1269bpback to top |