DY258338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_SHIDS (ATP synthase subunit beta OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=atpD PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 9.287e-53 Identity = 86/161 (53.42%), Postives = 115/161 (71.43%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G++ QVIGAVVDV F + +P + AL V + + RLVLEV Q +G G+VRTIAM ++GL RG V + PI VPVG+ TLGRIMNV+GEP+D KG++ E IHR AP++ E + Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 4 GKIVQVIGAVVDVEFPQDAVPRVYDALAVQNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELI 164 HSP 2 Score: 60.4622 bits (145), Expect = 9.287e-53 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M VI+ Sbjct: 156 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVID 201
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_KLEP7 (ATP synthase subunit beta OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=atpD PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 9.287e-53 Identity = 86/161 (53.42%), Postives = 116/161 (72.05%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G++ QVIGAVVDV F + +P + ALEV + + LVLEV Q +G G+VRTIAM ++GL RG V + PI VPVG+ TLGRIMNV+G+P+D KGD+ E IHR AP++ E ++ Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 4 GKIVQVIGAVVDVEFPQDAVPRVYEALEVQNGNEVLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGQPVDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELI 164 HSP 2 Score: 60.4622 bits (145), Expect = 9.287e-53 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M VI+ Sbjct: 156 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVID 201
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_RUTMC (ATP synthase subunit beta OS=Ruthia magnifica subsp. Calyptogena magnifica GN=atpD PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 9.288e-53 Identity = 90/161 (55.90%), Postives = 114/161 (70.81%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G++ Q+IGAV+DV F + +P I AL+V + L LEV Q +G+ VVRTIAM G+EGL RG +V NTG PI VPVG TLGRIMNV+GEPID GD+ E IHR APA+ E A ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 4 GKITQIIGAVIDVEFSVDSMPKIYDALKVSETG--LTLEVQQQLGDYVVRTIAMGGSEGLKRGLKVTNTGGPIKVPVGVKTLGRIMNVLGEPIDNAGDIGQEVSWAIHRSAPAYHELAPAAELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 59.3066 bits (142), Expect = 9.288e-53 Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVF+GVGERT EGND Y +M + V++ Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFSGVGERTREGNDFYHEMKESNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_PSEPW (ATP synthase subunit beta OS=Pseudomonas putida (strain W619) GN=atpD PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 9.288e-53 Identity = 86/163 (52.76%), Postives = 116/163 (71.17%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G++ Q+IGAV+DV F +G+P + AL+V LEV Q +G+GVVRTIAM TEGL RG V+++G+ I+VPVG+ TLGRIM+V+G PIDE G + E IHR+AP+F +QA +L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 2 SSGRIVQIIGAVIDVEFPRDGVPSVYNALKV--EGAETTLEVQQQLGDGVVRTIAMGSTEGLKRGLNVIDSGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHRDAPSFADQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 59.6918 bits (143), Expect = 9.288e-53 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++ Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_CAMC1 (ATP synthase subunit beta OS=Campylobacter concisus (strain 13826) GN=atpD PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.211e-52 Identity = 86/164 (52.44%), Postives = 112/164 (68.29%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVV----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G + QV+G VVDV F++ LP I A+EV +L+LEVA H+G+ VRTIAMD +EGL RG G+PI+VPVG LGRI NV+G+ IDE + + + IHR+ P F EQ+T+ +I TGIKVVDLLAPY +GGK+GLFGGAGVGK ++ L+ Sbjct: 3 GVISQVMGPVVDVDFNDYLPKINEAIEVFFEVEGKKHKLILEVAAHLGDNRVRTIAMDMSEGLTRGLEAKALGAPISVPVGEKVLGRIFNVVGDLIDEGEGINFDKHWSIHRDPPPFEEQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELI 166 HSP 2 Score: 65.855 bits (159), Expect = 1.211e-52 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+IMELI+NVA H G+SVFAGVGERT EGNDLY +M + V++ Sbjct: 158 KTVIIMELIHNVAFKHSGYSVFAGVGERTREGNDLYHEMKESNVLD 203
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_LARHH (ATP synthase subunit beta OS=Laribacter hongkongensis (strain HLHK9) GN=atpD PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.211e-52 Identity = 88/163 (53.99%), Postives = 115/163 (70.55%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G++ Q+IGAV+DV F + +P + AL+V S L LEV Q +G+GVVR IAM ++GL RG V NTG+ I+VPVG TLGRIM+V+G PIDE G + TE +PIHR AP F E + ++L TGIKV+DLL P+ +GGK+GLFGGAGVGK + L+ Sbjct: 2 SQGKIVQIIGAVIDVEFPRDSIPRVYDALKV--ESTGLTLEVQQQLGDGVVRCIAMGSSDGLKRGLPVTNTGAAISVPVGTATLGRIMDVLGTPIDELGPVATEERMPIHRAAPKFDELSASSELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 60.077 bits (144), Expect = 1.211e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H GFSVF GVGERT EGND Y +M + V++ Sbjct: 154 KTVNMMELIRNIAIEHSGFSVFTGVGERTREGNDFYHEMKESNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_BARHE (ATP synthase subunit beta OS=Bartonella henselae GN=atpD PE=3 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 1.278e-52 Identity = 105/169 (62.13%), Postives = 130/169 (76.92%), Query Frame = 3 Query: 276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLLTMLQR 782 + ++G + QVIGAVVDV+F+ LP IL ALE + RLVLEVAQH+GE VRTIAMD T+GLVRGQ+V +TG+ I+VPVG TLGRIMNVIGEP+D G + T IH+EAP +VEQ+T +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGK L+ L+ + + Sbjct: 54 EAAVGVIKQVIGAVVDVQFEGPLPNILNALETDNLGNRLVLEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQISVPVGEATLGRIMNVIGEPVDNVGPIATSKTRSIHQEAPEYVEQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELINNIAK 222 HSP 2 Score: 78.5666 bits (192), Expect = 8.950e-14 Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGV-INLGEQQG--EQQMCPLSKAKERSPLVALARGGPDWGLMLPKPFRE 1003 KTVLIMELINN+AKAHGG+SVFAGVGERT EGNDLY +M++ V +N + G E C L + P A AR GL + + FR+ Sbjct: 209 KTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYYEMIESRVNVNPKDNNGSTEGSKCALVYGQMNEPPGARARVALS-GLTIAESFRD 298
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_MYCPE (ATP synthase subunit beta OS=Mycoplasma penetrans GN=atpD PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 1.571e-52 Identity = 87/168 (51.79%), Postives = 112/168 (66.67%), Query Frame = 3 Query: 270 TGKGSIGQVCQVIGAVVDVRFDEG-LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 T K G + Q+ G VVDV+F +P I LEV + ++ +LVLEVA G+ V R I+M TEGL RG V+NT +PI PVG LGR+ NV+GEPID K + Y PIH++ P+F EQ+T+ +I TGIKV+DLL PY +GGKIGLFGGAGVGK L+ L+ Sbjct: 294 TLKSDKGIIYQIFGPVVDVKFARNQMPNINDCLEVKLPNNKKLVLEVALLEGDDVARCISMGSTEGLYRGLEVINTKNPIMAPVGSAVLGRMFNVVGEPIDNKPMPEKVEYSPIHKKPPSFDEQSTKTEIFETGIKVIDLLVPYVKGGKIGLFGGAGVGKTVLVQELI 461 HSP 2 Score: 70.4774 bits (171), Expect = 1.571e-52 Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTVL+ ELI+N+A HGG S+FAGVGERT EGNDLY +M+ GVIN Sbjct: 453 KTVLVQELIHNIATGHGGLSIFAGVGERTREGNDLYHEMIDGGVIN 498
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_LACLA (ATP synthase subunit beta OS=Lactococcus lactis subsp. lactis GN=atpD PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.578e-52 Identity = 88/169 (52.07%), Postives = 115/169 (68.05%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRF--DEGLPPILTAL----EVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G++ Q+IG VVDV F D LP I AL +V ++ LEVA +G+G VRTIAM+ T+GL RG VL+TG ++VPVG TLGR+ NV+G+ ID + + PIH++AP F E +T ++LVTGIKVVDLLAPY +GGK+GLFGGAGVGK L+ L+ Sbjct: 2 SSGKITQIIGPVVDVEFGSDAKLPEINNALIVYKDVNGLKTKITLEVALELGDGAVRTIAMESTDGLTRGLEVLDTGKAVSVPVGEATLGRVFNVLGDVIDGGEEFAADAERNPIHKKAPTFDELSTANEVLVTGIKVVDLLAPYLKGGKVGLFGGAGVGKTVLIQELI 170 HSP 2 Score: 67.0106 bits (162), Expect = 1.578e-52 Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVI 874 KTVLI ELI+N+A+ HGG SVF GVGERT EGNDLY +M + GVI Sbjct: 162 KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVI 206
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_LACS1 (ATP synthase subunit beta OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=atpD PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.578e-52 Identity = 90/166 (54.22%), Postives = 117/166 (70.48%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRF--DEGLPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEH-YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G+V QVIG VVDV+F E LP I AL+V + LV+EVA +G+G++RT+AMD T+GL RG V TG+ I+VPVG+ TLGR+ NV+G ID + +H PIHR+AP + + +T +IL TGIKV+DLLAPY +GGKIGLFGGAGVGK L+ L+ Sbjct: 2 SSGKVVQVIGPVVDVQFPLSESLPDIDDALKVKREDGTELVIEVALELGDGIMRTVAMDSTDGLKRGAEVEGTGASISVPVGKDTLGRVFNVLGNTIDNGPEFDEDHPRNPIHRDAPKYDQLSTGIEILETGIKVIDLLAPYIKGGKIGLFGGAGVGKTVLIQELI 167 HSP 2 Score: 65.855 bits (159), Expect = 1.578e-52 Identity = 56/143 (39.16%), Postives = 70/143 (48.95%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVINLGEQQ-GEQQMCPLSKAKERSPLVALARGGPDWGLMLPKPFREAEGAKRGGPFSQKFFPFPPTQIQKGFAFFLGPYPPWLVGYHTPRFGPTGSLGRR 1165 KTVLI ELI+N+A+ H G SVF GVGERT EGNDLY +M + GV+ G+ P ++ + VAL GL L + FR+ EG + F F F TQ + LG P VGY G L R Sbjct: 159 KTVLIQELIHNIAQEHNGISVFTGVGERTREGNDLYFEMKESGVLEKTAMVFGQMNEPPGARMR-----VALT------GLTLAEYFRDVEG-QDVLLFIDNIFRF--TQAGSEVSALLGRIPS-AVGYQPTLATEMGQLQER 286 The following BLAST results are available for this feature:
BLAST of DY258338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258338 ID=DY258338; Name=DY258338; organism=Citrus clementina; type=EST; length=1269bpback to top |