DY258338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJR (ATP synthase subunit beta OS=Campylobacter jejuni (strain RM1221) GN=atpD PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.578e-52 Identity = 88/164 (53.66%), Postives = 114/164 (69.51%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G + QV+G VVDV F++ LP I A+ V S +LVLEVA H+G+ VRTIAMD T+GLVRG + G+PI+VPVG LGRI NV G+ IDE ++ + IHR+ PAF +Q+T+ +I TGIKVVDLLAPY +GGK+GLFGGAGVGK ++ L+ Sbjct: 3 GFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELI 166 HSP 2 Score: 65.855 bits (159), Expect = 1.578e-52 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+IMELI+NVA H G+SVFAGVGERT EGNDLY +M + V++ Sbjct: 158 KTVIIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLD 203
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJJ (ATP synthase subunit beta OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=atpD PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.578e-52 Identity = 88/164 (53.66%), Postives = 114/164 (69.51%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G + QV+G VVDV F++ LP I A+ V S +LVLEVA H+G+ VRTIAMD T+GLVRG + G+PI+VPVG LGRI NV G+ IDE ++ + IHR+ PAF +Q+T+ +I TGIKVVDLLAPY +GGK+GLFGGAGVGK ++ L+ Sbjct: 3 GFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELI 166 HSP 2 Score: 65.855 bits (159), Expect = 1.578e-52 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+IMELI+NVA H G+SVFAGVGERT EGNDLY +M + V++ Sbjct: 158 KTVIIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLD 203
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJE (ATP synthase subunit beta OS=Campylobacter jejuni GN=atpD PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.578e-52 Identity = 88/164 (53.66%), Postives = 114/164 (69.51%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G + QV+G VVDV F++ LP I A+ V S +LVLEVA H+G+ VRTIAMD T+GLVRG + G+PI+VPVG LGRI NV G+ IDE ++ + IHR+ PAF +Q+T+ +I TGIKVVDLLAPY +GGK+GLFGGAGVGK ++ L+ Sbjct: 3 GFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELI 166 HSP 2 Score: 65.855 bits (159), Expect = 1.578e-52 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+IMELI+NVA H G+SVFAGVGERT EGNDLY +M + V++ Sbjct: 158 KTVIIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLD 203
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJ8 (ATP synthase subunit beta OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=atpD PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.578e-52 Identity = 88/164 (53.66%), Postives = 114/164 (69.51%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G + QV+G VVDV F++ LP I A+ V S +LVLEVA H+G+ VRTIAMD T+GLVRG + G+PI+VPVG LGRI NV G+ IDE ++ + IHR+ PAF +Q+T+ +I TGIKVVDLLAPY +GGK+GLFGGAGVGK ++ L+ Sbjct: 3 GFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELI 166 HSP 2 Score: 65.855 bits (159), Expect = 1.578e-52 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+IMELI+NVA H G+SVFAGVGERT EGNDLY +M + V++ Sbjct: 158 KTVIIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLD 203
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_PSEPF (ATP synthase subunit beta OS=Pseudomonas fluorescens (strain Pf0-1) GN=atpD PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.578e-52 Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G++ Q+IGAV+DV F + +P I AL+V LEV Q +G+GVVRTIAM TEGL RG V NTG+ I+VPVG+ TLGRIM+V+G PIDE G + E IHR AP+F EQA ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 2 SSGRIVQIIGAVIDVEFPRDSVPSIYDALKV--QGAETTLEVQQQLGDGVVRTIAMGSTEGLKRGLDVNNTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHRAAPSFAEQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 59.6918 bits (143), Expect = 1.578e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++ Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_CAMJD (ATP synthase subunit beta OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=atpD PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.056e-52 Identity = 88/164 (53.66%), Postives = 114/164 (69.51%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G + QV+G VVDV F++ LP I A+ V S +LVLEVA H+G+ VRTIAMD T+GLVRG + G+PI+VPVG LGRI NV G+ IDE ++ + IHR+ PAF +Q+T+ +I TGIKVVDLLAPY +GGK+GLFGGAGVGK ++ L+ Sbjct: 3 GFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLEVAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGEEIPFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTVIIMELI 166 HSP 2 Score: 65.855 bits (159), Expect = 2.056e-52 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+IMELI+NVA H G+SVFAGVGERT EGNDLY +M + V++ Sbjct: 158 KTVIIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLD 203
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB2_MARMS (ATP synthase subunit beta 2 OS=Marinomonas sp. (strain MWYL1) GN=atpD2 PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 2.057e-52 Identity = 85/163 (52.15%), Postives = 115/163 (70.55%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G + QVIGAV+DV F + +P + AL + +LVLEV Q +G+G+VRTIAM T+G+ RG V NT P++VPVG TLGRIM+V+G PIDEKG + E IHR AP++ EQ++ ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 2 SSGHIVQVIGAVMDVEFPRDSVPKVYDALTI--EGKQLVLEVQQQLGDGIVRTIAMGSTDGIKRGLVVENTNKPVSVPVGTKTLGRIMDVLGNPIDEKGPIGEEERWSIHRSAPSYAEQSSSNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 60.4622 bits (145), Expect = 2.057e-52 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M VI+ Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVID 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_SYMTH (ATP synthase subunit beta OS=Symbiobacterium thermophilum GN=atpD PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.681e-52 Identity = 86/165 (52.12%), Postives = 108/165 (65.45%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G++ ++GAVVDV F +G P L V+ + + L LEVAQH+G VR IAMD T+GL RG+ V +T +PITVPVG LGRI NV+GE ID KG + + LPIHRE P ++L TGIKV+DLL PY RGGKIGLFGGAGVGK ++ L+ Sbjct: 6 GKILAIMGAVVDVEFPDGHLPKLNHALVIRNGGERGDINLTLEVAQHLGNNQVRCIAMDSTDGLRRGETVYDTQAPITVPVGEPVLGRIFNVLGETIDGKGPVNSPVSLPIHREPPGVANVDPATEMLPTGIKVIDLLCPYARGGKIGLFGGAGVGKTVMIQELI 170 HSP 2 Score: 66.2402 bits (160), Expect = 2.681e-52 Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV+I ELI+N+A GG+S+FAGVGERT EGNDLY +M++ GVI+ Sbjct: 162 KTVMIQELIHNIAYKFGGYSIFAGVGERTREGNDLYHEMIEAGVID 207
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB1_NITEC (ATP synthase subunit beta 1 OS=Nitrosomonas eutropha (strain C91) GN=atpD1 PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 2.682e-52 Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 G++ Q IGAV+DV F EG+P + AL V L LEV Q +G+GVVRTIA+ ++GL RG V NT I+VPVG TLGRIM+V+G PIDE G++ E ++PIHR APAF E + ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 5 GKIVQCIGAVIDVEFASEGIPKVYDAL--VMEGSELTLEVQQQLGDGVVRTIALGSSDGLRRGMMVTNTQKQISVPVGTKTLGRIMDVLGRPIDEMGEIGAESFMPIHRTAPAFDELSASTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELI 163 HSP 2 Score: 59.6918 bits (143), Expect = 2.682e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++ Sbjct: 155 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 200
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_PSEF5 (ATP synthase subunit beta OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=atpD PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 2.682e-52 Identity = 89/163 (54.60%), Postives = 113/163 (69.33%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767 S G++ Q+IGAV+DV F + +P I AL+V LEV Q +G+GVVRTIAM TEGL RG V NTG+ I+VPVG+ TLGRIM+V+G PIDE G + E IHR AP+F EQA +L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+ Sbjct: 2 SSGRIVQIIGAVIDVEFPRDSVPSIYDALKV--QGAETTLEVQQQLGDGVVRTIAMGSTEGLKRGLDVNNTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHRPAPSFAEQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 59.6918 bits (143), Expect = 2.682e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2 Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877 KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++ Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 199 The following BLAST results are available for this feature:
BLAST of DY258338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258338 ID=DY258338; Name=DY258338; organism=Citrus clementina; type=EST; length=1269bpback to top |