DY258338
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSC (ATP synthase subunit beta OS=Dehalococcoides sp. (strain CBDB1) GN=atpD PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.556e-52 Identity = 82/161 (50.93%), Postives = 113/161 (70.19%), Query Frame = 3
Query: 288 GQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
G+V QVIG+VVDV F + +P + ALE+ + ++VLEV H+G V+ ++ T+GL RG V++T P++VPVGR TLGRI NV+GE +D +GD+K+E +PIHR AP E + Q+L TGIKV+DL+AP+ RGGKIG GGAGVGK L+ L+
Sbjct: 4 GKVIQVIGSVVDVEFSADSMPALFNALEIPRENGKMVLEVQSHVGNNRVKCLSFTPTDGLERGAEVIDTTRPLSVPVGRGTLGRIFNVLGEALDNRGDVKSEKTMPIHRLAPGMDELESSAQVLETGIKVIDLIAPFARGGKIGALGGAGVGKTVLIQELI 164 HSP 2 Score: 62.3882 bits (150), Expect = 4.556e-52 Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVI 874
KTVLI ELI N+A H GFSVFAGVGER+ EGNDL+ +M GV+
Sbjct: 156 KTVLIQELIRNIATEHEGFSVFAGVGERSREGNDLWHEMEDSGVL 200
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSB (ATP synthase subunit beta OS=Dehalococcoides sp. (strain BAV1) GN=atpD PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.556e-52 Identity = 82/161 (50.93%), Postives = 113/161 (70.19%), Query Frame = 3
Query: 288 GQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
G+V QVIG+VVDV F + +P + ALE+ + ++VLEV H+G V+ ++ T+GL RG V++T P++VPVGR TLGRI NV+GE +D +GD+K+E +PIHR AP E + Q+L TGIKV+DL+AP+ RGGKIG GGAGVGK L+ L+
Sbjct: 4 GKVIQVIGSVVDVEFSADSMPALFNALEIPRENGKMVLEVQSHVGNNRVKCLSFTPTDGLERGAEVIDTTRPLSVPVGRGTLGRIFNVLGEALDNRGDVKSEKTMPIHRLAPGMDELESSAQVLETGIKVIDLIAPFARGGKIGALGGAGVGKTVLIQELI 164 HSP 2 Score: 62.3882 bits (150), Expect = 4.556e-52 Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVI 874
KTVLI ELI N+A H GFSVFAGVGER+ EGNDL+ +M GV+
Sbjct: 156 KTVLIQELIRNIATEHEGFSVFAGVGERSREGNDLWHEMEDSGVL 200
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_PSEAE (ATP synthase subunit beta OS=Pseudomonas aeruginosa GN=atpD PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.557e-52 Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 3
Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
S G++ Q+IGAV+DV F + +P I AL+V V LEV Q +G+GVVR+IAM TEGL RG V +TG+ I+VPVG+ TLGRIM+V+G PIDE G + E IHREAP++ +QA ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+
Sbjct: 2 SSGRIVQIIGAVIDVEFPRDAVPSIYEALKV--QGVETTLEVQQQLGDGVVRSIAMGSTEGLKRGLNVDSTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHREAPSYADQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 59.6918 bits (143), Expect = 4.557e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877
KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++
Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_PSEAB (ATP synthase subunit beta OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=atpD PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.557e-52 Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 3
Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
S G++ Q+IGAV+DV F + +P I AL+V V LEV Q +G+GVVR+IAM TEGL RG V +TG+ I+VPVG+ TLGRIM+V+G PIDE G + E IHREAP++ +QA ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+
Sbjct: 2 SSGRIVQIIGAVIDVEFPRDAVPSIYEALKV--QGVETTLEVQQQLGDGVVRSIAMGSTEGLKRGLNVDSTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHREAPSYADQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 59.6918 bits (143), Expect = 4.557e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877
KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++
Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_PSEA8 (ATP synthase subunit beta OS=Pseudomonas aeruginosa (strain LESB58) GN=atpD PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.557e-52 Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 3
Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
S G++ Q+IGAV+DV F + +P I AL+V V LEV Q +G+GVVR+IAM TEGL RG V +TG+ I+VPVG+ TLGRIM+V+G PIDE G + E IHREAP++ +QA ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+
Sbjct: 2 SSGRIVQIIGAVIDVEFPRDAVPSIYEALKV--QGVETTLEVQQQLGDGVVRSIAMGSTEGLKRGLNVDSTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHREAPSYADQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 59.6918 bits (143), Expect = 4.557e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877
KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++
Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_PSEA7 (ATP synthase subunit beta OS=Pseudomonas aeruginosa (strain PA7) GN=atpD PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.557e-52 Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 3
Query: 282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
S G++ Q+IGAV+DV F + +P I AL+V V LEV Q +G+GVVR+IAM TEGL RG V +TG+ I+VPVG+ TLGRIM+V+G PIDE G + E IHREAP++ +QA ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+
Sbjct: 2 SSGRIVQIIGAVIDVEFPRDAVPSIYEALKV--QGVETTLEVQQQLGDGVVRSIAMGSTEGLKRGLNVDSTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHREAPSYADQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 59.6918 bits (143), Expect = 4.557e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877
KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++
Sbjct: 154 KTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_PSEU5 (ATP synthase subunit beta OS=Pseudomonas stutzeri (strain A1501) GN=atpD PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 4.557e-52 Identity = 87/163 (53.37%), Postives = 114/163 (69.94%), Query Frame = 3
Query: 282 SIGQVCQVIGAVVDVRFDEGLPP-ILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
S G++ Q+IGAV+DV F L P + AL+V LEV Q +G+G+VRTIAM TEGL RG V+NTG+ I+VPVG+ TLGRIM+V+G PIDE G + E IHR AP++ EQA ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGK + L+
Sbjct: 2 SSGRIVQIIGAVIDVEFPRDLVPNVYDALKV--QGAETTLEVQQQLGDGIVRTIAMGSTEGLKRGLDVVNTGTGISVPVGKQTLGRIMDVLGNPIDEAGPIGEEERWTIHRAAPSYSEQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI 162 HSP 2 Score: 60.4622 bits (145), Expect = 4.557e-52 Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877
KTV +MELI N+A H G+SVFAGVGERT EGND Y +M V++
Sbjct: 154 KTVNMMELIRNIAMEHSGYSVFAGVGERTREGNDFYHEMKDSNVLD 199
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_BARQU (ATP synthase subunit beta OS=Bartonella quintana GN=atpD PE=3 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 4.855e-52 Identity = 103/169 (60.95%), Postives = 129/169 (76.33%), Query Frame = 3
Query: 276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLLTMLQR 782
KG++G++ QVIGAVVDV+F+ LP IL ALE + RLVLEVAQH+GE VRTIAMD T+GL RGQ+V +T + I VPVG TLGRIMNVIGEP+D G + T IH++AP +V+Q+T +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGK L+ L+ + +
Sbjct: 59 KGAVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLTRGQKVFDTETQICVPVGEATLGRIMNVIGEPVDNVGPIATTKTRSIHQKAPEYVDQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELINNIAK 227 HSP 2 Score: 77.411 bits (189), Expect = 1.994e-13 Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGV-INLGEQQGEQQ--MCPLSKAKERSPLVALARGGPDWGLMLPKPFRE 1003
KTVLIMELINN+AKAHGG+SVFAGVGERT EGNDLY +M++ V +N + G + C L + P A AR GL + + FR+
Sbjct: 214 KTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYYEMIESRVNVNPKDNNGSTKGSKCALVYGQMNEPPGARARVALS-GLTIAESFRD 303
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_MYCPN (ATP synthase subunit beta OS=Mycoplasma pneumoniae GN=atpD PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.938e-52 Identity = 87/162 (53.70%), Postives = 108/162 (66.67%), Query Frame = 3
Query: 288 GQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
G+V QVIG VVDV F E LP I L V L LE AQ +G+ +VR IA+ TEGL R ++V N PI VPVG+ LGR+ NV+G+PID K +L + LPIHR+ P+F +Q+ +I TGIKV+DLL PY RGGKIGLFGGAGVGK L+ L+
Sbjct: 9 GKVHQVIGPVVDVIFTESSQLPRIYDCLSVKLAGEELFLEAAQLIGDDIVRCIALGPTEGLARNEKVTNYNHPIEVPVGKNVLGRMFNVLGKPIDGKEELPKKPQLPIHRKPPSFDDQSNTLEIFETGIKVIDLLTPYARGGKIGLFGGAGVGKTVLVQELI 170 HSP 2 Score: 68.5514 bits (166), Expect = 5.938e-52 Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVIN 877
KTVL+ ELI+N+AK H G SVFAGVGERT EGNDLY +M++ GVI+
Sbjct: 162 KTVLVQELIHNIAKEHSGLSVFAGVGERTREGNDLYYEMIQGGVID 207
BLAST of DY258338 vs. ExPASy Swiss-Prot
Match: ATPB_LYSSC (ATP synthase subunit beta OS=Lysinibacillus sphaericus (strain C3-41) GN=atpD PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 5.938e-52 Identity = 92/167 (55.09%), Postives = 112/167 (67.07%), Query Frame = 3
Query: 288 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLP-IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKLCLLWNLL 767
G V QV+G VVDV+FD G LP I +L V + L LEVA H+G+ VRTIAM T+GL RG V ++G I+VPVG VTLGR+ NV+GE ID ++ + IHREAP F E +T +IL TGIKVVDLLAPY +GGKIGLFGGAGVGK L+ L+
Sbjct: 4 GHVIQVMGPVVDVKFDNGQLPAIYNSLTVKIERPNEEPTILALEVALHLGDDSVRTIAMSSTDGLQRGAEVTDSGKAISVPVGEVTLGRVFNVLGEVIDLGEEIPADARRDSIHREAPTFEELSTTVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELI 170 HSP 2 Score: 67.3958 bits (163), Expect = 5.938e-52 Identity = 56/142 (39.44%), Postives = 69/142 (48.59%), Query Frame = 2
Query: 740 KTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRKMMKRGVINLGEQQGEQQMCPLSKAKERSPLVALARGGPDWGLMLPKPFREAEGAKRGGPFSQKFFPFPPTQIQKGFAFFLGPYPPWLVGYHTPRFGPTGSLGRR 1165
KTVLI ELINN+A+ H G SVFAGVGERT EGNDL+ +M GVI +Q +++ VAL GL + + FR+ +GA F F F TQ + LG P VGY G L R
Sbjct: 162 KTVLIQELINNIAQEHSGISVFAGVGERTREGNDLFFEMSDSGVI----KQTAMVFGQMNEPPGARMRVALT------GLTMAEYFRDEQGAD-VLLFIDNIFRF--TQAGSEVSALLGRMPS-AVGYQPTLATEMGKLQER 289 The following BLAST results are available for this feature:
BLAST of DY258338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258338 ID=DY258338; Name=DY258338; organism=Citrus clementina; type=EST; length=1269bpback to top |