DY258382

Overview
NameDY258382
Unique NameDY258382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_XENTR (Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.368e-29
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERP-----------PDSE---------LPEADEDQEDGDERWDPDSDMDV 381
            ++++SFN+PLL+LGGGGYT+RNVARCW YET + +   + +++P  EY+EYF PD+TLH    + +EN+NSRQ L++IR  + E L  L HAPSVQ  + P           PD E          PEA  +  DGD   D +SD+++
Sbjct:  281 QYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPSDILSYERTDEPDPEERGSEDNYSRPEASNEFYDGDHDNDKESDVEI 428          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_XENLA (Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.786e-29
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERP-----------PDSE---------LPEADEDQEDGDERWDPDSDMDV 381
            ++++SFN+PLL+LGGGGYT+RNVARCW YET + +   + +++P  EY+EYF PD+TLH    + +EN+NSRQ L++IR  + E L  L HAPSVQ  + P           PD E          PEA  +  DGD   D +SD+++
Sbjct:  281 QYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTVFESLKMLNHAPSVQIHDVPSDILNYERTDEPDPEERGGEDNYSRPEASNEFYDGDHDNDKESDVEI 428          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_CHICK (Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.333e-29
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERP-----------PDSE---------LPEADEDQEDGDERWDPDSDMDV 381
            ++++SFN+PLL+LGGGGYT+RNVARCW YET + +   + +++P  EY+EYF PD+TLH    + +EN+NSRQ L++IR  + E L  L HAPSVQ  + P           PD E          PEA  +  DGD   D +SD+++
Sbjct:  281 EYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPSDLLSYDRTDEPDPEERGSEENYSRPEAANEFYDGDHDNDKESDVEI 428          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_TETNG (Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.047e-29
Identity = 62/119 (52.10%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDER 354
            +F++SF +PLL+LGGGGYT+RNVARCW +ET + L   + D++P  EY+EYF PD+TLH    + +EN+NSRQ LE+IR  + E L  L HAPSVQ  + P D  L     D+ D DER
Sbjct:  281 EFVKSFKIPLLVLGGGGYTVRNVARCWTFETSLLLEESISDELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLEQIRQTVFENLKMLNHAPSVQIHDVPSDM-LNYERNDEPDPDER 398          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_RAT (Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.198e-29
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPD--------------------SELPEADEDQEDGDERWDPDSDMDV 381
            ++++SFN+PLL+LGGGGYT+RNVARCW YET + +   + +++P  EY+EYF PD+TLH    + +EN+NSRQ L++IR  + E L  L HAPSVQ  + P D                       PEA  +  DGD   D +SD+++
Sbjct:  281 EYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDNDKESDVEI 428          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_PONAB (Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.198e-29
Identity = 64/148 (43.24%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQF------------------QERPPDSEL--PEADEDQEDGDERWDPDSDMDV 381
            ++++SFN+PLL+LGGGGYT+RNVARCW YET + +   + +++P  EY+EYF PD+TLH    + +EN+NSRQ L++IR  + E L  L HAPSVQ                   +ER P+     PEA  +  DGD   D +SD+++
Sbjct:  281 EYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIRDVPAGLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDNDKESDVEI 428          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_HUMAN (Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.198e-29
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPD--------------------SELPEADEDQEDGDERWDPDSDMDV 381
            ++++SFN+PLL+LGGGGYT+RNVARCW YET + +   + +++P  EY+EYF PD+TLH    + +EN+NSRQ L++IR  + E L  L HAPSVQ  + P D                       PEA  +  DGD   D +SD+++
Sbjct:  281 EYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDNDKESDVEI 428          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_MOUSE (Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.788e-29
Identity = 63/144 (43.75%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPD----SELPEADEDQEDGDERWD-PDS-----DMDVDDERKS 399
            ++++SFN+PLL+LGGGGYT+RNVARCW YET + +   + +++P  EY+EYF PD+TLH    + +EN+NSRQ L++IR  + E L  L HAPSVQ  + P D        EAD ++   +E +  P++     D D D++++S
Sbjct:  281 EYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDNDKES 424          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: HDAC3_DANRE (Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.788e-29
Identity = 64/148 (43.24%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 KFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHV-APSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQ---------ERPPDSE-----------LPEADEDQEDGDERWDPDSDMDV 381
            +F++ F +PLL+LGGGGYT+RNVARCW +ET + +   + D++P  EY+EYF PD+TLH    + +EN+NSRQ LE+IR  + E L  L HAPSVQ +         ERP +++            PEA  +  DGD   D +SD+++
Sbjct:  281 EFVKGFKIPLLVLGGGGYTVRNVARCWTFETSLLVEESISDELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLEQIRQTVFENLKMLNHAPSVQIRDVPSDLLSYERPDEADPEERGSEENFSRPEAANEFYDGDHDHDKESDVEI 428          
BLAST of DY258382 vs. ExPASy Swiss-Prot
Match: CLR6_SCHPO (Histone deacetylase clr6 OS=Schizosaccharomyces pombe GN=clr6 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.747e-28
Identity = 57/121 (47.11%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    4 FMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADED----QEDGDER 354
            F++SFN+P++ +GGGGYT+RNVAR W YETG+  G E+D+ +P ++Y +Y+GPDY L+V  +NMEN N+RQ L+ I ++++E L  L  APSVQ  + P D     A++     +E  DER
Sbjct:  284 FVKSFNLPMICVGGGGYTVRNVARVWTYETGLLAGEELDENLPYNDYLQYYGPDYKLNVLSNNMENHNTRQYLDSITSEIIENLRNLSFAPSVQMHKTPGDFTFENAEKQNIAKEEIMDER 404          
The following BLAST results are available for this feature:
BLAST of DY258382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HDAC3_XENTR1.368e-2943.92Histone deacetylase 3 OS=Xenopus tropicalis GN=hda... [more]
HDAC3_XENLA1.786e-2943.92Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 P... [more]
HDAC3_CHICK2.333e-2943.92Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE... [more]
HDAC3_TETNG3.047e-2952.10Histone deacetylase 3 OS=Tetraodon nigroviridis GN... [more]
HDAC3_RAT5.198e-2942.57Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac... [more]
HDAC3_PONAB5.198e-2943.24Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=... [more]
HDAC3_HUMAN5.198e-2942.57Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=... [more]
HDAC3_MOUSE6.788e-2943.75Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=... [more]
HDAC3_DANRE6.788e-2943.24Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2... [more]
CLR6_SCHPO5.747e-2847.11Histone deacetylase clr6 OS=Schizosaccharomyces po... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1BH08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258382 ID=DY258382; Name=DY258382; organism=Citrus clementina; type=EST; length=815bp
AAATTTATGAGATCATTCAATGTGCCTCTGTTGCTGCTGGGTGGTGGTGG
TTACACTATTCGGAATGTTGCTCGTTGCTGGTGCTACGAGACAGGAGTTG
CACTTGGAGTAGAGGTTGATGACAAGATGCCACAGCATGAGTATTATGAG
TATTTTGGTCCTGACTATACTCTTCATGTTGCTCCCAGTAACATGGAGAA
TAAGAATTCGCGCCAGTTGCTTGAGGAAATAAGGAATAAGCTTCTCGAAT
ATCTCTCAAAGCTTCAACATGCACCCAGTGTCCAGTTTCAGGAAAGACCA
CCTGATTCTGAACTTCCAGAGGCGGATGAAGATCAGGAGGATGGCGATGA
GAGATGGGATCCAGATTCTGACATGGATGTTGATGATGAACGAAAGTCCC
TACCAAACAGAGTTAAGAGAGAAGCAGTTGAACCTGAGCAAAAAGATCGG
GAGGGCCTTAAAGGAATGGCCGAGCAAGCTAGAGGCTTCGACATGATTGC
AGACGATTCTATAAGCACAAAGGTTTTAGATATGAGTTCAATGCCAATTG
ATGAACCGAGCATCAAAGTTGAACAAGAAAACATGAGCAAGGCATCTGAT
CACATGTACCCGCATTCGTAACTAAACTTTATCTCAGCATCGACATCTGC
TATACGAATTATGTGTTTTAGACATGAAAACCTGATTGGTTGTTCCAAAC
ATCGCTTTCCAAGTTATATTTCTCCCATCAGTCTAATGTATTGAAGTATA
AAACTTCTGTCCTAGCAAAATGTCAAACTTATTTTCTTTGATATTTATCC
TCGTGCTTTGGCCGC
back to top