DY258383

Overview
NameDY258383
Unique NameDY258383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1279
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_HELPJ (Citrate synthase OS=Helicobacter pylori J99 GN=gltA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.653e-15
Identity = 76/249 (30.52%), Postives = 115/249 (46.18%), Query Frame = 1
Query:  109 TGKVPSKEQVDGLS--KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYED-SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-GFD--------------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 801
            TG++P K Q + L    ELR R+ V + +     A P  AHPM + +SGV  L              H++ + E  Y+  +  ++A++P +AA  Y R      II  D +  Y  N   ML G+                P  +E     +T+H+DH G N S+ T   VAS    PY + +A ++ L G LHG AN++VLL ++ + D    +    ++KD      N    + GFGH V +  DPR
Sbjct:   91 TGELP-KNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYS--------THQNMHTEEDYQTMARRIVAKIPTLAAICY-RNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVGITPLEVEAFDKILTLHADH-GQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMGFGHRVYKSYDPR 323          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_THIFE (Citrate synthase OS=Thiobacillus ferrooxidans GN=gltA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.280e-15
Identity = 67/237 (28.27%), Postives = 113/237 (47.68%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV---QSEFQEAYEKG--IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 801
            G +P    ++     LR    V   V + +  +PVT HPM      V +L +   Q E  +A E+G  +H           ++ +IAR+P + A   Q  + +  I P+ D L +  NF +ML     DP   +++   + +H++H   N S  +  +  S L++PY     A+  LAGPLHG ANQ+       VV+   E  + +Q+  Y+ + + + + + GFGH + +  DPR
Sbjct:   56 GVLPGAADLERFDHGLRAHRQVKYNVREIMKFMPVTGHPMDMLHCAVASLGMFYPQQELSDA-ERGNTLHLDAM-------AMRIIARMPTIVAMWEQMRFGNDPISPRPD-LSHAANFLYMLSGREPDPAHTKILDSCLILHAEHTI-NASTFSVLVTGSTLTNPYHVIGGAIGTLAGPLHGGANQK-------VVEMLEEISSVQQVGAYLDRKMANKEKIWGFGHRIYKTRDPR 275          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_HELPY (Citrate synthase OS=Helicobacter pylori GN=gltA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.202e-15
Identity = 75/249 (30.12%), Postives = 114/249 (45.78%), Query Frame = 1
Query:  109 TGKVPSKEQVDGLS--KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYED-SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-GFD--------------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 801
            TG++P K Q + L    ELR R+ V + +     A P  AHPM + +SGV  L              H++ + E  Y+  +  ++A++P +AA  Y R      II  D +  Y  N   ML G+                P  +E     +T+H+DH   N S+ T   VAS    PY + +A ++ L G LHG AN++VLL ++ + D    +    ++KD      N    + GFGH V +  DPR
Sbjct:   91 TGELP-KNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYS--------THQNMHTEEDYQTMARRIVAKIPTLAAICY-RNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQ-NASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMGFGHRVYKSYDPR 323          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISYC_DICDI (Citrate synthase OS=Dictyostelium discoideum GN=gltA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.071e-14
Identity = 65/256 (25.39%), Postives = 111/256 (43.36%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQ----RIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQREFALNICLMI 846
            G +PSKEQ +  + ++ +   + + +   + +    AHPM    S + A+            G+   K  +   +    ++ ++P +AA  Y+    R Y D       ++L Y  NF +ML           P +   +     IH+DHE  N S  T   +AS L DPY + A +   L GPLHG AN+ VL  ++++        T E +  ++ +     Q + GFGH V +  DPR    +   + I  ++
Sbjct:  109 GDLPSKEQSNLWNTKIMNHTFIHENLISMMKSFRYDAHPMGMLISSLSAMSTFYPEANPALAGVDIYKNKQLMNKQIFRILGKLPTIAACAYRHRIGRPYND-----PSNTLSYTENFLYMLDRLSESNYKPHPVLTRALDKLFIIHADHEL-NCSTATMRQIASTLVDPYTACAGSAGALYGPLHGGANEAVLRMLEAI-------GTIENIPKFIEQVKQKKQRLMGFGHRVYKSYDPRAKILKTVTMEIFALL 351          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICJA (Citrate synthase (Fragment) OS=Rickettsia japonica GN=gltA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.827e-14
Identity = 65/246 (26.42%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 819
            G++PS EQ +  +K++   + V D ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNDRLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPYTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICCN (Citrate synthase OS=Rickettsia conorii GN=gltA PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.117e-14
Identity = 65/246 (26.42%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 819
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  IK +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   99 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMIKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 326          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICSL (Citrate synthase (Fragment) OS=Rickettsia slovaca GN=gltA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.317e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 819
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICSI (Citrate synthase (Fragment) OS=Rickettsia sibirica GN=gltA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.317e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 819
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICPA (Citrate synthase (Fragment) OS=Rickettsia parkeri GN=gltA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.317e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 819
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICAE (Citrate synthase OS=Rickettsia africae (strain ESF-5) GN=gltA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 5.317e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 819
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   99 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 326          
The following BLAST results are available for this feature:
BLAST of DY258383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CISY_HELPJ1.653e-1530.52Citrate synthase OS=Helicobacter pylori J99 GN=glt... [more]
CISY_THIFE6.280e-1528.27Citrate synthase OS=Thiobacillus ferrooxidans GN=g... [more]
CISY_HELPY8.202e-1530.12Citrate synthase OS=Helicobacter pylori GN=gltA PE... [more]
CISYC_DICDI1.071e-1425.39Citrate synthase OS=Dictyostelium discoideum GN=gl... [more]
CISY_RICJA1.827e-1426.42Citrate synthase (Fragment) OS=Rickettsia japonica... [more]
CISY_RICCN3.117e-1426.42Citrate synthase OS=Rickettsia conorii GN=gltA PE=... [more]
CISY_RICSL5.317e-1426.02Citrate synthase (Fragment) OS=Rickettsia slovaca ... [more]
CISY_RICSI5.317e-1426.02Citrate synthase (Fragment) OS=Rickettsia sibirica... [more]
CISY_RICPA5.317e-1426.02Citrate synthase (Fragment) OS=Rickettsia parkeri ... [more]
CISY_RICAE5.317e-1426.02Citrate synthase OS=Rickettsia africae (strain ESF... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258383 ID=DY258383; Name=DY258383; organism=Citrus clementina; type=EST; length=1279bp
GAGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTT
ACCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGC
TTCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCC
AAGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCAT
TGATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGG
TCATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGA
ATTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTT
GATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACA
AGGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAAC
TTCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAG
GCTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTC
ACACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTT
GCTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCA
GGAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACG
TAACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGG
CAGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAG
ATACACTTGTCAGAGGGAGTTTGCCTTGAACATTTGCCTGATGATCCATT
GTTTCCGCTGGGTTTCAAGCCTGTTTGGAAGTGCTGCCCCCCATATTAAC
AAAACCAAGGCAAGGTTAAAAACCCCCCTGCCAAATGTTTGATGCTCCCC
AGTGGGGGTGCTGCCTAAACCTTTTTGGGTTTGGCTGAAGCCAAAAATTT
AACCGGGTCCTTTTTTGAAAATACCAGGGAATTCTTGGAAACCGGCCCCT
CTTTTTAAATGGGGACCCCAACCTCCTGGGGCCGGCCCCTTGGGAAGGGC
CAAAAAGGGGTTCCTTTTTAAATTGGGAATTAGAAAAAAATTTTCAAAAA
AAAACCCCCTTTAAAAAATTTGGAAAAGGGGGGGGGGGGGGTTGAATATA
ATTTTTTTTTTCTTTCTCTCTATTAATATACTTTTCCCGTAAAAAAAAAA
CACCAGGGGGGGGGGGAAATTTTAGTGTG
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