DY258383

Overview
NameDY258383
Unique NameDY258383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1279
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICBE (Citrate synthase (Fragment) OS=Rickettsia bellii GN=gltA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.639e-13
Identity = 63/246 (25.61%), Postives = 113/246 (45.93%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKT--LNSGQVVPGFGHGVLRKTDPRYTCQRE 819
            G++P+ +Q +  +K++   A V + ++        ++HPM    + V +L         Y   ++  K  E  YE  ++ +IA++P +AA  Y+       + P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        + E +  Y+ K    N    + GFGH V +  DPR    +E
Sbjct:   92 GELPNNKQYNDFTKKVAHHALVNERLHYLFQTFCSSSHPMAIMLAAVGSLSA------FYPDLLNFFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFVYP-DNSLDFTENFLHMMFATPCEKYKVNPVIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACVSTGIASLWGPAHGGANEAVINMLKEI-------GSVENIPKYIAKAKDKNDNFRLMGFGHRVYKNYDPRAAVLKE 320          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_ABDS2 (Citrate synthase OS=Antarctic bacterium DS2-3R GN=gltA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.639e-13
Identity = 60/233 (25.75%), Postives = 103/233 (44.21%), Query Frame = 1
Query:  115 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDD--PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVW--KTLNSGQVVPGFGHGVLRKTDPR 801
            ++P+  ++       R    + + V  AID L    HPM    + V  L       +            E   E +++L+A  P V AY  +R   +  I P++D LDY  NF  M   ++  P+++E   + + ++++H   N S  T  ++ S L+D + +   A+  L GPLHG AN+ V+   + +     E++     +   W    L   + V GFGH V +  D R
Sbjct:   57 ELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLGANHARAQDSSP--------EANLEKAMSLLATFPSVVAYDQRRRRGEELIEPRED-LDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSF-NASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSR 279          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICPR (Citrate synthase OS=Rickettsia prowazekii GN=gltA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.446e-13
Identity = 63/246 (25.61%), Postives = 113/246 (45.93%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 819
            G++PS +Q    +K++   + V + ++        ++HPM    + V +L        A+   +    + E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  YV K  +      + GFGH V +  DPR    +E
Sbjct:   99 GELPSSDQYCNFTKKVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDL--LNFNETDYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSENIPKYVAKAKDKNDPFRLMGFGHRVYKSYDPRAAVLKE 326          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICAK (Citrate synthase (Fragment) OS=Rickettsia akari GN=gltA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.878e-13
Identity = 61/246 (24.80%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 819
            G++PS EQ +  +K++   + V + ++        ++HPM    + + +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       + P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++ +   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR +  +E
Sbjct:   92 GELPSIEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAIGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFVYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANAFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSENIPKYIAKAKDKSDPFRLMGFGHRVYKNYDPRASVLKE 319          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_BACSU (Citrate synthase 1 OS=Bacillus subtilis GN=citA PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.003e-12
Identity = 66/242 (27.27%), Postives = 109/242 (45.04%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGG--NFSHMLGFDDPKMLELMRL--YVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQREFA 825
            GK+PS E++     +L     +P+++ + I +LP     M+   + V AL                +  + P  E+++ LIA  P + AY  +    +  I P   S  YG   N+ +ML  + P   +   L  Y+ + ++H G N S  +  +  S  SD   +  AAL  + GPLHG A   V      ++++ GE    E  + Y+ + L  G+ + GFGH V +  DPR    R+ A
Sbjct:   52 GKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALG-------------ENTYTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAP---SSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEH-GMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAV----TKMLEDIGEK---EHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKA 269          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RHIME (Citrate synthase OS=Rhizobium meliloti GN=gltA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.234e-12
Identity = 64/243 (26.34%), Postives = 106/243 (43.62%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV----QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG-------FDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPR 801
            G++P+K Q       +     V + + +        AHPM      V AL       ++  + +++ +            SL +IA++P +AA  Y+       + PK+D LDY  NF  M           +P +   M     +H+DHE  N S  T  L  S+ ++P+   AA +  L GP HG AN+  L    +++ E G   T +++ +Y+ K  +      + GFGH V +  DPR
Sbjct:   93 GELPTKAQKADFDYRVTHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVA-----------SLRMIAKMPTIAAMAYKYHIGQPFVYPKND-LDYASNFLRMCFAVPCEEYVVNPVLARAMDRIFILHADHEQ-NASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAAL----NMLAEIG---TVDRIPEYITKAKDKNDPFRLMGFGHRVYKNYDPR 315          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_SULSO (Citrate synthase OS=Sulfolobus solfataricus GN=gltA PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.917e-12
Identity = 70/244 (28.69%), Postives = 109/244 (44.67%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQREFALNI 834
            GK+P+K++++ L  +L +   VP  V   I  +P  A  +     G  AL             I K+  W E   E ++++IA++  + A VY+R   +   IP + S  +  +F       +P   E+  M   + +++DHE    S     + AS LSD Y S  AAL  L GPLHG A +E     K  ++    N       D   K +N    + GFGH V +  DPR    ++ AL +
Sbjct:   54 GKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALA-----------SIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIP-EPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHEVP-ASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEA---FKQFIEIGDPNRVQNWFND---KVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTL 278          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY1_ARATH (Citrate synthase 1, peroxisomal OS=Arabidopsis thaliana GN=CSY1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.810e-12
Identity = 56/240 (23.33%), Postives = 108/240 (45.00%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV--QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI-IPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 801
            G +PS+ Q+      +   + VP  V   I ++P   HP+    + + AL +            G++KSK  +   +  + ++ + P +AA  Y R  K GK  +    +L Y  NF +M+          +P++  ++ +   + ++HE    +A   HL +S   D Y + +  +  + GPLHG A       +++ ++   E  T E + +++    N  + + GFGH + +  DPR
Sbjct:  142 GNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSK--QVRDKQIVRVLGQAPTIAAAAYLR--KAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSG-GDVYTAVSGGVGAIYGPLHGGA-------VEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPR 369          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_RICAU (Citrate synthase (Fragment) OS=Rickettsia australis GN=gltA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.976e-12
Identity = 64/244 (26.23%), Postives = 111/244 (45.49%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 819
            G++P+ EQ +  + ++   + V + ++    A   ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++ +   +  +  L GP HG AN+ V+  +K +     EN+     K    K  N    + GFGH V +  DPR    +E
Sbjct:   92 GELPTIEQYNNFTTQVAHHSLVNERLHYLFQAFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANAFACISTGIASLWGPAHGGANEAVINMLKEI--GSSENIPKFIAKA---KDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_ECOLI (Citrate synthase OS=Escherichia coli (strain K12) GN=gltA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.109e-11
Identity = 60/245 (24.49%), Postives = 111/245 (45.31%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 819
            G+ P++EQ D     +     + + + +   A    +HPM        AL   + + ++ +  ++  ++ E     +  L++++P +AA  Y+       + P++D L Y GNF +M+          +P +   M   + +H+DHE  N S  T     S+ ++P+   AA +  L GP HG AN+  L  ++ +        + + + ++V   K  N    + GFGH V +  DPR T  RE
Sbjct:   93 GEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEI-------SSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRE 321          
The following BLAST results are available for this feature:
BLAST of DY258383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CISY_RICBE2.639e-1325.61Citrate synthase (Fragment) OS=Rickettsia bellii G... [more]
CISY_ABDS22.639e-1325.75Citrate synthase OS=Antarctic bacterium DS2-3R GN=... [more]
CISY_RICPR3.446e-1325.61Citrate synthase OS=Rickettsia prowazekii GN=gltA ... [more]
CISY_RICAK5.878e-1324.80Citrate synthase (Fragment) OS=Rickettsia akari GN... [more]
CISY_BACSU1.003e-1227.27Citrate synthase 1 OS=Bacillus subtilis GN=citA PE... [more]
CISY_RHIME2.234e-1226.34Citrate synthase OS=Rhizobium meliloti GN=gltA PE=... [more]
CISY_SULSO2.917e-1228.69Citrate synthase OS=Sulfolobus solfataricus GN=glt... [more]
CISY1_ARATH3.810e-1223.33Citrate synthase 1, peroxisomal OS=Arabidopsis tha... [more]
CISY_RICAU4.976e-1226.23Citrate synthase (Fragment) OS=Rickettsia australi... [more]
CISY_ECOLI1.109e-1124.49Citrate synthase OS=Escherichia coli (strain K12) ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258383 ID=DY258383; Name=DY258383; organism=Citrus clementina; type=EST; length=1279bp
GAGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTT
ACCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGC
TTCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCC
AAGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCAT
TGATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGG
TCATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGA
ATTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTT
GATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACA
AGGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAAC
TTCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAG
GCTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTC
ACACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTT
GCTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCA
GGAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACG
TAACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGG
CAGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAG
ATACACTTGTCAGAGGGAGTTTGCCTTGAACATTTGCCTGATGATCCATT
GTTTCCGCTGGGTTTCAAGCCTGTTTGGAAGTGCTGCCCCCCATATTAAC
AAAACCAAGGCAAGGTTAAAAACCCCCCTGCCAAATGTTTGATGCTCCCC
AGTGGGGGTGCTGCCTAAACCTTTTTGGGTTTGGCTGAAGCCAAAAATTT
AACCGGGTCCTTTTTTGAAAATACCAGGGAATTCTTGGAAACCGGCCCCT
CTTTTTAAATGGGGACCCCAACCTCCTGGGGCCGGCCCCTTGGGAAGGGC
CAAAAAGGGGTTCCTTTTTAAATTGGGAATTAGAAAAAAATTTTCAAAAA
AAAACCCCCTTTAAAAAATTTGGAAAAGGGGGGGGGGGGGGTTGAATATA
ATTTTTTTTTTCTTTCTCTCTATTAATATACTTTTCCCGTAAAAAAAAAA
CACCAGGGGGGGGGGGAAATTTTAGTGTG
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