DY258383

Overview
NameDY258383
Unique NameDY258383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1279
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_ECOL6 (Citrate synthase OS=Escherichia coli O6 GN=gltA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.109e-11
Identity = 60/245 (24.49%), Postives = 111/245 (45.31%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 819
            G+ P++EQ D     +     + + + +   A    +HPM        AL   + + ++ +  ++  ++ E     +  L++++P +AA  Y+       + P++D L Y GNF +M+          +P +   M   + +H+DHE  N S  T     S+ ++P+   AA +  L GP HG AN+  L  ++ +        + + + ++V   K  N    + GFGH V +  DPR T  RE
Sbjct:   93 GEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEI-------SSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRE 321          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISYP_DICDI (Citrate synthase, peroxisomal OS=Dictyostelium discoideum GN=cshA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.448e-11
Identity = 64/250 (25.60%), Postives = 107/250 (42.80%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV-QSEFQEAYEKG-IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQREFALNI 834
            G +P+K Q+DG S ++     + + +   +      AHPM    S V AL     E   A   G I KS+      +    ++ ++P +AA  ++         P +  L Y  NF +ML          +P +   + +   +H+DHE    +A   H+ +S  +DPY S A A   L GP HG AN+ VL  +  +  +       E +  ++    +  + + GFGH + +  DPR    R  A  +
Sbjct:  128 GNLPNKSQLDGWSNKIMTHTFLHENLVGLMKTFRYDAHPMGMLISTVAALGTFYPEANPALAGGDIFKSE--NVRNKQIYRIVGKLPTIAACAWRHRIGRPYNTPVNH-LGYTENFLYMLDKLSEPDYKPNPVLCRALEILFILHADHELNCSTAAMRHISSSG-TDPYTSVAGAAGALYGPSHGGANEAVLDMLIHIGSK-------ENIPQFISDVKSKKKKLMGFGHRIYKNYDPRAKIIRRVAYEV 366          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_SALTY (Citrate synthase OS=Salmonella typhimurium GN=gltA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.470e-11
Identity = 59/245 (24.08%), Postives = 111/245 (45.31%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 819
            G+ P++E+ D     +     + + + +   A    +HPM        AL   + + ++ +  ++  ++ E     +  L++++P +AA  Y+       + P++D L Y GNF +M+          +P +   M   + +H+DHE  N S  T     S+ ++P+   AA +  L GP HG AN+  L  ++ +        + + + ++V   K  N    + GFGH V +  DPR T  RE
Sbjct:   93 GEKPTQEEYDEFRTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCETYEVNPVLERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEI-------SSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRE 321          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_BARQU (Citrate synthase OS=Bartonella quintana GN=gltA PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.226e-11
Identity = 66/240 (27.50%), Postives = 107/240 (44.58%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD--------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPR 801
            G++P+K++     + +     V +   +        +HPM   A  V  L   S F   Y   I   K  +     ++ LI++VP +AA  Y+       + P++D L Y  NF HM  F         +P +   M    T+H+DHE  N S  T  LV S+ ++P+   AA +  L GP HG AN+  L  ++ +        + E++ +++   K  N    + GFGH V +  DPR
Sbjct:   93 GELPTKQEKIDFDRCIMQHMMVHEQFTRFFHGFRRDSHPM---AVMVACLGAMSAF---YHDSID-IKDAQQRMIAAIRLISKVPTLAAMAYKYSIGQAFVYPRND-LSYAANFLHMC-FSVPCEEYKINPVLSRAMDRIFTLHADHEQ-NASTSTVRLVGSSGANPFACIAAGVACLWGPAHGGANEACLKMLQKI-------GSVERIPEFIARAKDKNDPFRLMGFGHRVYKNYDPR 315          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY2_RHITR (Citrate synthase, plasmid OS=Rhizobium tropici GN=pcsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.226e-11
Identity = 64/243 (26.34%), Postives = 105/243 (43.21%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV----QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG-------FDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPR 801
            G++P+  Q       +     V + + +        AHPM      V AL       ++  + +++ +            SL +IA++P +AA  Y+       + PK+D LDY  NF  M           +P +   M     +H+DHE  N S  T  L  S+ ++P+   AA +  L GP HG AN+  L    +++ E G   T +++ +Y+   K  N    + GFGH V +  DPR
Sbjct:   93 GELPTAAQKKDFDYRVVHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVA-----------SLRMIAKMPTLAAMAYKYHIGQPFVYPKND-LDYASNFLRMCFAVPCEEYVVNPVLARAMDRIFILHADHEQ-NASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANERAL----NMLTEIG---TVDRIPEYIARAKDKNDPFRLMGFGHRVYKNYDPR 315          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY1_RHITR (Citrate synthase, chromosomal OS=Rhizobium tropici GN=ccsA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.213e-11
Identity = 64/243 (26.34%), Postives = 105/243 (43.21%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV----QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG-------FDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPR 801
            G++P+  Q       +     V + + +        AHPM      V AL       ++  + +++ +            SL +IA++P +AA  Y+       + PK+D LDY  NF  M           +P +   M     +H+DHE  N S  T  L  S+ ++P+   AA +  L GP HG AN+  L    +++ E G   T +++ +Y+   K  N    + GFGH V +  DPR
Sbjct:   93 GELPTAAQKKDFDYRVVHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVA-----------SLRMIAKMPTLAAMAYKYHIGQPFVYPKND-LDYASNFLRMCFAVPCEEYVVNPVLARAMDRIFILHADHEQ-NASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAAL----NMLTEIG---TVDRIPEYIARAKDKNDPFRLMGFGHRVYKNYDPR 315          
BLAST of DY258383 vs. ExPASy Swiss-Prot
Match: CISY_BARBA (Citrate synthase (Fragment) OS=Bartonella bacilliformis GN=gltA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.502e-11
Identity = 68/240 (28.33%), Postives = 108/240 (45.00%), Query Frame = 1
Query:  112 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD--------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPR 801
            G++P+K+Q     + +     V +   +        +HPM   A  V  L   S F   Y   I+ +   +     S+ LI++VP +AA  Y+       + P++D L+Y  NF HM  F          P +   M    T+H+DHE  N S  T  L  S+ ++PY   AA +  L GP HG AN+  L     ++ E G   + +++ +++   K  N    + GFGH V +  DPR
Sbjct:   35 GELPNKQQKIDFDRCIMRHTMVHEQFARFFHGFRRDSHPM---AVMVACLGAMSAF---YHDSINITDPQQRMIA-SIRLISKVPTLAAMAYKYSIGQPFVYPRND-LNYATNFLHMC-FSVPCEEHKISPVIARAMDRIFTLHADHEQ-NASTSTVRLAGSSGANPYACIAAGVACLWGPAHGGANEACL----KMLQEIG---SVKKIPEFIARAKDKNDPFRLMGFGHRVYKNYDPR 257          
The following BLAST results are available for this feature:
BLAST of DY258383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CISY_ECOL61.109e-1124.49Citrate synthase OS=Escherichia coli O6 GN=gltA PE... [more]
CISYP_DICDI1.448e-1125.60Citrate synthase, peroxisomal OS=Dictyostelium dis... [more]
CISY_SALTY2.470e-1124.08Citrate synthase OS=Salmonella typhimurium GN=gltA... [more]
CISY_BARQU3.226e-1127.50Citrate synthase OS=Bartonella quintana GN=gltA PE... [more]
CISY2_RHITR3.226e-1126.34Citrate synthase, plasmid OS=Rhizobium tropici GN=... [more]
CISY1_RHITR4.213e-1126.34Citrate synthase, chromosomal OS=Rhizobium tropici... [more]
CISY_BARBA5.502e-1128.33Citrate synthase (Fragment) OS=Bartonella bacillif... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258383 ID=DY258383; Name=DY258383; organism=Citrus clementina; type=EST; length=1279bp
GAGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTT
ACCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGC
TTCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCC
AAGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCAT
TGATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGG
TCATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGA
ATTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTT
GATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACA
AGGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAAC
TTCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAG
GCTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTC
ACACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTT
GCTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCA
GGAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACG
TAACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGG
CAGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAG
ATACACTTGTCAGAGGGAGTTTGCCTTGAACATTTGCCTGATGATCCATT
GTTTCCGCTGGGTTTCAAGCCTGTTTGGAAGTGCTGCCCCCCATATTAAC
AAAACCAAGGCAAGGTTAAAAACCCCCCTGCCAAATGTTTGATGCTCCCC
AGTGGGGGTGCTGCCTAAACCTTTTTGGGTTTGGCTGAAGCCAAAAATTT
AACCGGGTCCTTTTTTGAAAATACCAGGGAATTCTTGGAAACCGGCCCCT
CTTTTTAAATGGGGACCCCAACCTCCTGGGGCCGGCCCCTTGGGAAGGGC
CAAAAAGGGGTTCCTTTTTAAATTGGGAATTAGAAAAAAATTTTCAAAAA
AAAACCCCCTTTAAAAAATTTGGAAAAGGGGGGGGGGGGGGTTGAATATA
ATTTTTTTTTTCTTTCTCTCTATTAATATACTTTTCCCGTAAAAAAAAAA
CACCAGGGGGGGGGGGAAATTTTAGTGTG
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