DY258387

Overview
NameDY258387
Unique NameDY258387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_YARLI (AdoMet-dependent rRNA methyltransferase SPB1 OS=Yarrowia lipolytica GN=SPB1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.155e-34
Identity = 87/208 (41.83%), Postives = 119/208 (57.21%), Query Frame = 3
Query:  201 IMGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 821
            I  K  + + D YYR AKE+G+RARS+FK++QI++++  F E  K V+DLCAAPGSW QV S+       L P +      LI+  D+ P+ P+  VI  Q DIT     + + ++    KAD V+ DGAP+V      D F QS+L+L  L +    L +GG F+ K+FR KD + L    + FF  V   KP SSRN S E F VC
Sbjct:    4 IQKKHGKGRLDHYYRLAKEKGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSWCQVASQ-------LCPVNS-----LIIGCDIVPIKPLPNVITFQSDITTDHCRQQLRQYMKTWKADTVMHDGAPNVGMAWAQDAFTQSELVLQSLKLAVEFLNKGGTFVTKVFRSKDYNNLMWVFQQFFEKVEATKPPSSRNVSAEIFVVC 199          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_NEUCR (AdoMet-dependent rRNA methyltransferase spb-1 OS=Neurospora crassa GN=spb-1 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 7.483e-34
Identity = 85/223 (38.12%), Postives = 119/223 (53.36%), Query Frame = 3
Query:  201 IMGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            I  K  + + D +Y+ AKE+G+RAR+AFKL+Q+++++   E  K  +DLCAAPGSW QV        A+  P +      +I+ +DL P+ PI  VI  Q DIT  +    +  H    KAD+V+ DGAP+V      D + Q++L L  L + T  L EGG F+ K+FR KD + L       F  V   KP SSRN S E F VC      K +  +   P
Sbjct:    3 IQKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVC-------AETMPTNS-----IIIGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKADVVLHDGAPNVGTAWVQDSYNQAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPPSSRNVSAEIFVVCRGFKAPKRIDPKLLDP 213          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_CRYNE (AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus neoformans GN=SPB1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.667e-33
Identity = 80/220 (36.36%), Postives = 116/220 (52.73%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K  + + D +YR AKE+G+RARSAFKL+ ++ ++++    +  +DLCAAPG W QV  +  Y+P             LI+ +DL  + P+  V     DIT     + + +H    KADLV+ DGAP+V      D F Q++L+L  L + T  L +GG F+ K+FR +D + L       F  V   KP SSRN S E F VC      K +  +F  P
Sbjct:    7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEK--YMPKG----------SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSAWVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPSSRNVSAEIFVVCRDFIAPKHIDPKFLDP 214          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RRMJ3_CHICK (Putative rRNA methyltransferase 3 OS=Gallus gallus GN=FTSJ3 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 2.844e-33
Identity = 79/220 (35.91%), Postives = 119/220 (54.09%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K  + +RD +Y  AKE G+R+RSAFKLLQ++ +F   +  + ++DLCAAPG W QV S+  ++P             L++ +DL P+ PI  V+ +Q DIT  +  + + +     K D+V+ DGAP+V      D + Q+ L L  L +    L +GG FI K+FR +D   L    + FF  V   KP++SRN S E F VC+       +  +F  P
Sbjct:    6 KVGKSRRDKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQVASK--FMPVS----------SLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGAPNVGASWVHDAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWIFQQFFHKVQATKPQASRNESAEIFVVCQGYQAPDKIDSKFFDP 213          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_CANAL (AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans GN=SPB1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.714e-33
Identity = 91/221 (41.18%), Postives = 119/221 (53.85%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K S+ + D YY  AKE+G+RARS+FK++QI+E++  F E  K V+DLCAAPGSW QV S+       L P +      LI+ +D+ P+ P+  VI  Q DIT       +  H    KAD V+ DGAP+V      D F QSQL L  L +    L  GG F+ KIFR +D + L    +  F  V   KP +SRN S E F VC+     K L  R   P
Sbjct:    7 KHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQ-------LCPINS-----LIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDP 215          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_ASHGO (AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii GN=SPB1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.335e-33
Identity = 92/221 (41.63%), Postives = 117/221 (52.94%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K S+ + D YY  AKE+G+RARS+FK++QI+E+F  F E  K V+DLCAAPGSW QV S        L P +      LI+ +D+ PM P+  VI  Q DIT       +  +    KAD V+ DGAP+V      D F QS L L  L +    L  GG F+ KIFR KD + L    +  F  V   KP +SRN S E F VC+     K L  R   P
Sbjct:    7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASN-------LCPVNS-----LIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLNWVQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLMWVFQQLFDKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDP 215          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_YEAST (AdoMet-dependent rRNA methyltransferase SPB1 OS=Saccharomyces cerevisiae GN=SPB1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 8.274e-33
Identity = 92/221 (41.63%), Postives = 118/221 (53.39%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K S+ + D YY  AKE+G+RARS+FK++QI+E++  F E  K V+DLCAAPGSW QV S       KL P +      LI+ +D+ PM P+  VI  Q DIT       +  +    KAD V+ DGAP+V      D F QSQL L  L +    L   G F+ KIFR KD + L    +  F  V   KP +SRN S E F VC+     K L  R   P
Sbjct:    7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS-------KLCPVNS-----LIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKRLDPRLLDP 215          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_CANGA (AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata GN=SPB1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.081e-32
Identity = 92/221 (41.63%), Postives = 117/221 (52.94%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K S+ + D YY  AKE+G+RARS+FK++QI+E+F  F E  K V+DLCAAPGSW QV S       KL P +      LI+ +D+ PM P+  VI  Q DIT       +  +    KAD V+ DGAP+V      D F QS L L  L +    L   G F+ KIFR KD + L    +  F  V   KP +SRN S E F VC+     K L  R   P
Sbjct:    7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVAS-------KLCPVNS-----LIIGVDIVPMKPMPNVITFQSDITTEDCRSRLRGYMKTWKADTVLHDGAPNVGLGWAQDAFTQSHLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKGFKAPKKLDPRLLDP 215          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_SCHPO (AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces pombe GN=spb1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.411e-32
Identity = 82/220 (37.27%), Postives = 119/220 (54.09%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K ++ + D +Y+ AKE+G+R+R+AFKL+Q++++++  E  K ++DLCAAPG W QV S+         P S      LIV +DL P+ PI        DIT+ +    +  +    KAD+V+ DGAP+V      D + Q+QL+L  + +    L  GG F+ K+FR +D + L    K  F  V   KP SSRN S E F VC      K L  RF  P
Sbjct:    7 KTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASKTC------KPGS------LIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHDGAPNVGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRNVSAEIFVVCRGYKAPKKLDPRFTDP 214          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RRMJ3_PONAB (Putative rRNA methyltransferase 3 OS=Pongo abelii GN=FTSJ3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.411e-32
Identity = 79/206 (38.35%), Postives = 112/206 (54.37%), Query Frame = 3
Query:  207 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            GK  + +RD +Y  AKE G+R+RSAFKL+Q++  F   +  + ++DLCAAPG W QV        AK  P S      LIV +DL P+ P+  V+ +Q DIT  R  + + +     K D+V+ DGAP+V      D + Q+ L L  L +    L  GG FI K+FR +D   L    +  F  V   KP++SR+ S E F VC+
Sbjct:    5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVA-------AKFMPVSS-----LIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQ 198          
The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
SPB1_YARLI1.155e-3441.83AdoMet-dependent rRNA methyltransferase SPB1 OS=Ya... [more]
SPB1_NEUCR7.483e-3438.12AdoMet-dependent rRNA methyltransferase spb-1 OS=N... [more]
SPB1_CRYNE1.667e-3336.36AdoMet-dependent rRNA methyltransferase SPB1 OS=Cr... [more]
RRMJ3_CHICK2.844e-3335.91Putative rRNA methyltransferase 3 OS=Gallus gallus... [more]
SPB1_CANAL3.714e-3341.18AdoMet-dependent rRNA methyltransferase SPB1 OS=Ca... [more]
SPB1_ASHGO6.335e-3341.63AdoMet-dependent rRNA methyltransferase SPB1 OS=As... [more]
SPB1_YEAST8.274e-3341.63AdoMet-dependent rRNA methyltransferase SPB1 OS=Sa... [more]
SPB1_CANGA1.081e-3241.63AdoMet-dependent rRNA methyltransferase SPB1 OS=Ca... [more]
SPB1_SCHPO1.411e-3237.27AdoMet-dependent rRNA methyltransferase spb1 OS=Sc... [more]
RRMJ3_PONAB1.411e-3238.35Putative rRNA methyltransferase 3 OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bp
GAGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCA
GGGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCT
TTCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGT
GCAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTAT
ATCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGC
AAAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAG
ACGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGT
GCTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCC
GGCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGG
CTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAG
GGTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGA
TGGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTG
GCCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGT
TTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAA
GATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTAT
TTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGC
ATAGAGGCATTCGCTGTTTGTGAGATTATTCCCCTCCTGAAGGATTTAAC
CCAAAGATTTGCCCCGCCTTTTGGAAAAAGTGGAAACCCCCTGGGAAGAA
AGGATCCAGATTGCGATAATGGTTGGTTGGAAAGACCAAATAAAGGTTAC
TCCCCCTTTTTACCTGGCGGGGCCCCAAAGGGTATGAATCCCAACCGTTC
CTTACCCCTGCCCAAAGTTGCCGACGGAACCATACAAAACTTGGATTCCC
GCCCCCCCCCCTTTGCCCCCCCTTAAAAAAAAACCCTGGGAAAGAAAAAA
ACCTTCCCCCCCAGGGGTAACCCAAAACCCGAAAAAACCCTCCCTCGGAT
TTTCTTTATTTTTCCCTCCTACTTTTTTCCCTAAAAGGGGGGCCCCCCCC
CCGGGGGGGTTTAAAATTTTTTTTTGG
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