DY258387

Overview
NameDY258387
Unique NameDY258387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RRMJ3_HUMAN (Putative rRNA methyltransferase 3 OS=Homo sapiens GN=FTSJ3 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.411e-32
Identity = 79/206 (38.35%), Postives = 112/206 (54.37%), Query Frame = 3
Query:  207 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            GK  + +RD +Y  AKE G+R+RSAFKL+Q++  F   +  + ++DLCAAPG W QV        AK  P S      LIV +DL P+ P+  V+ +Q DIT  R  + + +     K D+V+ DGAP+V      D + Q+ L L  L +    L  GG FI K+FR +D   L    +  F  V   KP++SR+ S E F VC+
Sbjct:    5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVA-------AKFMPVSS-----LIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQ 198          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_USTMA (AdoMet-dependent rRNA methyltransferase SPB1 OS=Ustilago maydis GN=SPB1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.843e-32
Identity = 79/205 (38.54%), Postives = 114/205 (55.61%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            K ++ + D +Y  AKE+G+R+R+AFKL+Q++++FN  E  +  +DLCAAPG W QV S+  ++PA            LIV +DL P+ PI   I    DI + +  + + +     KAD+V+ DGAP+V      D + QS+L L  L +    L  GG F+ K+FR KD + L       F  V   KP SSRN S E F VC+
Sbjct:    8 KTAKGRLDKFYWLAKEQGYRSRAAFKLVQLNKKFNFLEKARCCIDLCAAPGGWLQVASK--FMPAN----------SLIVGVDLVPIKPIPRTITFAEDINSYKCRDQLRQILKDWKADIVIHDGAPNVGTAWVQDAYAQSELTLQSLRLAVEFLTAGGTFVTKVFRSKDYNNLLWVFNQLFKKVEATKPSSSRNVSAEIFVVCQ 200          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_METTP (Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.843e-32
Identity = 78/201 (38.81%), Postives = 118/201 (58.71%), Query Frame = 3
Query:  216 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            +RD++D YYRKAKEEG+RARSA+KL QI+++F+I     RVVDL AAPG W QV              +RE    ++V +DL+ + P+EG++ +QGDIT   T E +     G +AD+V+ D AP+++G+ D+D      L  A L +   +L+ GG F+ K+F+G   +    ++K  F  V    P +SR  S E + +
Sbjct:    2 ARDQKDHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQV--------------ARELSGGIVVGVDLERIEPLEGIVTIQGDITKEETLEQIAAALGG-QADVVISDAAPNLSGIWDVDHARSIDLSRAALRIAKRLLRPGGSFLVKVFQGDMFNDYLEEVKREFSSVHAYTPPASRKESAEIYVI 187          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RRMJ3_RAT (Putative rRNA methyltransferase 3 OS=Rattus norvegicus GN=Ftsj3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.144e-32
Identity = 79/206 (38.35%), Postives = 112/206 (54.37%), Query Frame = 3
Query:  207 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            GK  + +RD +Y  AKE G+R+RSAFKL+Q++  F   +  + ++DLCAAPG W QV        AK  P S      LIV +DL P+ P+  V+ +Q DIT  R  + + +     K D+V+ DGAP+V      D + Q+ L L  L +    L  GG FI K+FR +D   L    +  F  V   KP++SR+ S E F VC+
Sbjct:    5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVA-------AKFMPVSS-----LIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRHESAEIFVVCQ 198          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RRMJ3_MOUSE (Putative rRNA methyltransferase 3 OS=Mus musculus GN=Ftsj3 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.144e-32
Identity = 79/206 (38.35%), Postives = 112/206 (54.37%), Query Frame = 3
Query:  207 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            GK  + +RD +Y  AKE G+R+RSAFKL+Q++  F   +  + ++DLCAAPG W QV        AK  P S      LIV +DL P+ P+  V+ +Q DIT  R  + + +     K D+V+ DGAP+V      D + Q+ L L  L +    L  GG FI K+FR +D   L    +  F  V   KP++SR+ S E F VC+
Sbjct:    5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVA-------AKFMPVSS-----LIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQASRHESAEIFVVCQ 198          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_KLULA (AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces lactis GN=SPB1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.363e-32
Identity = 90/221 (40.72%), Postives = 116/221 (52.49%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K S+ + D YY  AKE+G+RARS+FK++QI+E++  F E  K V+DLCAAPGSW QV S        L P +      LI+ +D+ PM  +  VI  Q DIT       +  +    KAD V+ DGAP+V      D F QS L L  L +    L  GG F+ KIFR KD + L    +  F  V   KP +SRN S E F VC+     K L  R   P
Sbjct:    8 KNSKGRLDKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASN-------LCPVNS-----LIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGLSWAQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPPASRNVSAEIFVVCKNFKAPKKLDPRLLDP 216          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_PELUB (Ribosomal RNA large subunit methyltransferase E OS=Pelagibacter ubique GN=rlmE PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.004e-32
Identity = 80/205 (39.02%), Postives = 122/205 (59.51%), Query Frame = 3
Query:  216 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEII 830
            ++ KRDIY R+++ +G+RARSA+KL++IDE+F IF+    V+DL A+PGSWSQ +SR +          + G L   V+IDL+ M  IE  IQ++GD T+  + E +   F   K D+VV D A + TG+ D+D     +L +  +     +L + G+F++KIF G   + +    K  F  V   KPKSSR  S E+F +C+I+
Sbjct:   12 NKQKRDIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYISRTV----------KSGRL---VSIDLKGMEEIENTIQIKGDFTDLESQEKIKALFKS-KVDVVVSDMAVNTTGIKDIDAIYTGELAMEAMNFSKEMLVKEGRFVSKIFLGSSFNEIVALGKKLFKEVKVFKPKSSRKESKESFIICKIL 202          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: SPB1_DEBHA (AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces hansenii GN=SPB1 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 7.744e-31
Identity = 87/221 (39.37%), Postives = 116/221 (52.49%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPP 869
            K S+ + D YY  AKE+G+RARS+FK++QI+E++  F E  K V+DLCAAPGSW QV S+       L P +      LI+ +D+ P+  +   I  Q DIT       +  H    KAD V+ DGAP+V      D F QS L L  L +    L  GG F+ KIFR +D + L    +  F  V   KP +SRN S E F VC+     K +  R   P
Sbjct:    7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQ-------LCPINS-----LIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKADTVLHDGAPNVGLGWVQDAFTQSHLTLQALKLAVENLNTGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPPASRNVSAEIFVVCKGYKSPKKMDPRLLDP 215          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RRMJ3_DICDI (rRNA methyltransferase 3 homolog OS=Dictyostelium discoideum GN=fsjC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.253e-30
Identity = 74/205 (36.10%), Postives = 112/205 (54.63%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            K ++ + D +Y  AKE+G+R+R+AFKL+Q+++++N     K  +DLCAAPG W QV S+  Y+P +           LIV +DL P+  +   I +  DIT  +    + +     K D+ + DGAP++      D + Q++L L  L + T  L  GG F+ K+FRG D + L       F  V   KP SSRN+S E F VC+
Sbjct:    7 KLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQVASK--YMPVQ----------SLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKVDVCLHDGAPNMGTSWVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYNSLIWVFNKLFKKVESTKPPSSRNASAEIFVVCQ 199          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_VARPS (Ribosomal RNA large subunit methyltransferase E OS=Variovorax paradoxus (strain S110) GN=rlmE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.491e-29
Identity = 81/198 (40.91%), Postives = 111/198 (56.06%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPD-SREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D Y + A  EG+RAR+A+KL +IDE   + +  + VVDL + PG+WSQ      YL  ++SP+ +  G+L   I+A+D+ PM PIEGV  +QGD   A   E V+    G KADLVV D AP+++G+H  D    + LI   +    H LK  G  +AK+F G     L    K  F  V   KPK+SR+ S E F V
Sbjct:   21 DPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQ------YLRRRMSPEGAAAGELNGTIIALDILPMEPIEGVTFLQGDFREAELLEQVLGVLAGRKADLVVSDMAPNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHGSGYDELVKLFKANFRTVKPFKPKASRDKSSETFLV 212          
The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RRMJ3_HUMAN1.411e-3238.35Putative rRNA methyltransferase 3 OS=Homo sapiens ... [more]
SPB1_USTMA1.843e-3238.54AdoMet-dependent rRNA methyltransferase SPB1 OS=Us... [more]
RLME_METTP1.843e-3238.81Ribosomal RNA large subunit methyltransferase E OS... [more]
RRMJ3_RAT3.144e-3238.35Putative rRNA methyltransferase 3 OS=Rattus norveg... [more]
RRMJ3_MOUSE3.144e-3238.35Putative rRNA methyltransferase 3 OS=Mus musculus ... [more]
SPB1_KLULA5.363e-3240.72AdoMet-dependent rRNA methyltransferase SPB1 OS=Kl... [more]
RLME_PELUB7.004e-3239.02Ribosomal RNA large subunit methyltransferase E OS... [more]
SPB1_DEBHA7.744e-3139.37AdoMet-dependent rRNA methyltransferase SPB1 OS=De... [more]
RRMJ3_DICDI2.253e-3036.10rRNA methyltransferase 3 homolog OS=Dictyostelium ... [more]
RLME_VARPS2.491e-2940.91Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bp
GAGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCA
GGGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCT
TTCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGT
GCAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTAT
ATCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGC
AAAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAG
ACGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGT
GCTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCC
GGCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGG
CTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAG
GGTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGA
TGGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTG
GCCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGT
TTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAA
GATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTAT
TTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGC
ATAGAGGCATTCGCTGTTTGTGAGATTATTCCCCTCCTGAAGGATTTAAC
CCAAAGATTTGCCCCGCCTTTTGGAAAAAGTGGAAACCCCCTGGGAAGAA
AGGATCCAGATTGCGATAATGGTTGGTTGGAAAGACCAAATAAAGGTTAC
TCCCCCTTTTTACCTGGCGGGGCCCCAAAGGGTATGAATCCCAACCGTTC
CTTACCCCTGCCCAAAGTTGCCGACGGAACCATACAAAACTTGGATTCCC
GCCCCCCCCCCTTTGCCCCCCCTTAAAAAAAAACCCTGGGAAAGAAAAAA
ACCTTCCCCCCCAGGGGTAACCCAAAACCCGAAAAAACCCTCCCTCGGAT
TTTCTTTATTTTTCCCTCCTACTTTTTTCCCTAAAAGGGGGGCCCCCCCC
CCGGGGGGGTTTAAAATTTTTTTTTGG
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