DY258387

Overview
NameDY258387
Unique NameDY258387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_WOLTR (Ribosomal RNA large subunit methyltransferase E OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rlmE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.236e-28
Identity = 74/200 (37.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y +K  ++ +R+RSA+KL++ID +F + +A +++VDL A+PG WSQV S+K                  +VAID++P+  I GV  +Q DI    T       F   K D+++ D AP+  GL  +D      L  A L    H L  GGKF+ KIF+G+     Y +LK  F +V + KPKSSR+ S E + V
Sbjct:   24 RHLNDQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQKIVDLGASPGGWSQVASQKGVK---------------VVAIDIKPVNTISGVKYIQYDINELETLR---ERFKDQKFDVILSDMAPESCGLKSLDHIRIMLLCEAALNFAKHFLNYGGKFVVKIFQGESDKDFYNELKKMFKIVKYFKPKSSRSESTEMYLV 205          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_METAC (Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina acetivorans GN=rlmE PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.047e-27
Identity = 74/201 (36.82%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  216 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            +RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ +    VVDL AAPG W QV         +LS          ++ +DLQ +APIEGV  +QGDI    T + +IR      AD+V+CD AP+++G    D     +L  + L     +LK  G F+ K+F+G   +    +++  F  V    P++SR+ S E + +
Sbjct:    2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAK-------QLSGGK-------VLGVDLQRIAPIEGVETIQGDINADSTIKKIIRAVGEKGADVVLCDAAPNLSGNWSYDHARSIELTTSALECAKKILKPKGNFVVKVFQGDMFNDYLEKVRDNFVHVKAYSPQASRSQSAEIYVI 188          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_NOVAD (Ribosomal RNA large subunit methyltransferase E OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rlmE PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.367e-27
Identity = 77/203 (37.93%), Postives = 104/203 (51.23%), Query Frame = 3
Query:  216 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            SR   D Y +KAK EGWR+R+AFKL+++DE+F + +  KRVVDL  APG WSQV+ +K       +P ++      IV IDL P  PIEGV   + D       E +    DG   DLV+ D A +  G    D      L+   +      L  GG F+AK+F G   + L   LK  F  V  AKP +SR  S E + + +
Sbjct:   27 SRQLNDPYVKKAKAEGWRSRAAFKLIELDEKFGLLKGAKRVVDLGIAPGGWSQVVRKK-------APAAK------IVGIDLLPTEPIEGVTIFEMDFMADEAPEALQSALDG-PPDLVLSDMAANTVGHKQTDHLRTMGLVETAVDFAVQTLAPGGAFVAKVFAGGTDTELLAILKKNFTTVKHAKPPASRKDSSEWYVIAQ 215          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_METST (Ribosomal RNA large subunit methyltransferase E OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rlmE PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.367e-27
Identity = 74/205 (36.10%), Postives = 117/205 (57.07%), Query Frame = 3
Query:  210 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            KA  DK   YY+ AK++ +R+R+++KL Q+D+++++ +    VVDL AAPG WSQV++  +           EG    I+++DL+ + PI  E    V+GD T   T +++I   DG KAD+V+ D AP +TG+ D+D F    L +A + ++ ++LK  G  I K F+G+    +   LK  F  V   KP SSR  S E + +
Sbjct:    5 KAKHDKEH-YYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVAETI---------GEEGK-GQIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELIDG-KADVVLSDAAPKLTGIKDIDNFRAYDLSMAVIEIIDNILKNNGNLIMKAFQGEAYQEIIKNLKKKFRNVKTTKPNSSRKRSAEMYVI 197          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_METJA (Ribosomal RNA large subunit methyltransferase E OS=Methanocaldococcus jannaschii GN=rlmE PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.785e-27
Identity = 72/205 (35.12%), Postives = 115/205 (56.10%), Query Frame = 3
Query:  225 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIE--GVIQVQGDIT---NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            KRD YY+ AK+  +R+R++FKL+Q++E+FN+ +  K V+DL  APG W QV +R++            GD   ++ IDLQP+ P E   V+ ++GD T   N      +I + D  K D+V+ D +P+++G  D+D      L+   L + T +LKE G F+AK+F G         +K +F  V   KP++SR  S E + + +
Sbjct:   13 KRDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQV-AREIV-----------GDKGFVIGIDLQPVKPFEYDNVVAIKGDFTLEENLNKIRELIPN-DEKKVDVVISDASPNISGYWDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVNLVKKYFEKVYITKPQASRKESAEVYVIAK 204          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_WOLPM (Ribosomal RNA large subunit methyltransferase E OS=Wolbachia pipientis wMel GN=rlmE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.045e-27
Identity = 71/196 (36.22%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D Y +K  ++G+R+RSA+KL+++D +F +F+  ++++DL A+PG WSQV S+K                  +VA+D++PM  I GV  +Q DI N    E++   F   K D+++ D AP+  GL  +D      L  A L    H L  GG F+ KIF+G+       +LK  F  V + KPKSSR+ S E + V
Sbjct:    3 DQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQKG---------------ANVVALDIKPMNAINGVEFIQCDIINE--FEILREKFKDQKFDVILSDMAPESCGLKSLDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSRSESTEMYLV 181          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_METBF (Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rlmE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.784e-27
Identity = 71/201 (35.32%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  216 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            +RD+RD YYR+AKEEG+R+R++FKL QI+E  +I      VVDL AAPG W QV              ++E     ++ +DLQ + PIEGV  +QG+I    T + +I+      AD+V+CD AP+++G    D     +L  + L     +LK  G F+ K+F+G   +    +++  F       PK+SR+ S E + +
Sbjct:    2 ARDRRDYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQV--------------AKELSGGKVLGVDLQRIVPIEGVETIQGNINADSTIQKIIKTVGAKGADVVLCDAAPNLSGNWSYDHARSIELATSALECAKKILKPKGNFVVKVFQGDMFNDYMQKVRDNFVRTMAYSPKASRSQSAEIYVI 188          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_ARCFU (Ribosomal RNA large subunit methyltransferase E OS=Archaeoglobus fulgidus GN=rlmE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.784e-27
Identity = 71/200 (35.50%), Postives = 110/200 (55.00%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            +D++D YY KAK+EG+R+R+A+KLLQ++  F +      V+DL A PG WSQV +    L A+            +VA+D+ PM P+E V  ++GDIT   T E  IR       D+V+ D +P ++G   +D      L  A  ++   VLK GG F+ K+F+G++    + +LK  F    F  P++SR  S E + +
Sbjct:    2 KDRQDYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAA---LLGAR------------VVAVDINPMKPLENVTFIRGDITLPETLE-KIREISP-DYDVVMSDASPKISGKWTIDHLRSIDLARASFSIAKEVLKPGGNFVVKVFQGEEIQKFFNELKPHFRFKKFHSPQASRKRSAEVYFI 184          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICAH (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia akari (strain Hartford) GN=rlmE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.157e-26
Identity = 81/200 (40.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  KA+ EG+R+R+A+KLL+I E+F +F    ++VDL AAPG WSQV S+ +    K S +S       I++IDL  + PI GV  +Q D     T E++I+  DG KAD+V+ D A + TG    D      L          VLK  G FIAKIFRG   + L  ++K  F  V   KP SSR+ S E + V
Sbjct:   31 RQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLI----KASDNSLNNK---IISIDLLEIEPIIGVEFLQKDFFEENTEELIIQVLDG-KADIVMSDMASNTTGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLNKVKCEFKTVKHFKPSSSRSESTEIYLV 222          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_META3 (Ribosomal RNA large subunit methyltransferase E OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rlmE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.157e-26
Identity = 66/200 (33.00%), Postives = 109/200 (54.50%), Query Frame = 3
Query:  225 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            K D YY+ AK+  +R+R+++KLLQ++E+F I      VVDL  APG W Q     +            G+   ++ +DLQ + P+  E ++ +QGD+T   T   +I      KAD+V+CD +P+++G+ ++D     +L L  L   TH+L++ G F+ K+F+G         L  +F  V   KPK+SR+ S E + +
Sbjct:   13 KNDFYYKLAKQNHYRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQASYDLV------------GEDGFVIGVDLQKVKPLREENIVAIQGDMTKKETINKIIDLMPS-KADVVICDASPNISGVWEVDHSRSIELSLMALIATTHLLRKNGNFVVKVFQGSLFDQYVQLLTKYFKKVQTTKPKASRSVSAEVYVI 199          
The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RLME_WOLTR1.236e-2837.00Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_METAC1.047e-2736.82Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_NOVAD1.367e-2737.93Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_METST1.367e-2736.10Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_METJA1.785e-2735.12Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_WOLPM3.045e-2736.22Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_METBF6.784e-2735.32Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ARCFU6.784e-2735.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RICAH1.157e-2640.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_META31.157e-2633.00Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bp
GAGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCA
GGGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCT
TTCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGT
GCAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTAT
ATCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGC
AAAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAG
ACGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGT
GCTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCC
GGCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGG
CTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAG
GGTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGA
TGGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTG
GCCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGT
TTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAA
GATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTAT
TTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGC
ATAGAGGCATTCGCTGTTTGTGAGATTATTCCCCTCCTGAAGGATTTAAC
CCAAAGATTTGCCCCGCCTTTTGGAAAAAGTGGAAACCCCCTGGGAAGAA
AGGATCCAGATTGCGATAATGGTTGGTTGGAAAGACCAAATAAAGGTTAC
TCCCCCTTTTTACCTGGCGGGGCCCCAAAGGGTATGAATCCCAACCGTTC
CTTACCCCTGCCCAAAGTTGCCGACGGAACCATACAAAACTTGGATTCCC
GCCCCCCCCCCTTTGCCCCCCCTTAAAAAAAAACCCTGGGAAAGAAAAAA
ACCTTCCCCCCCAGGGGTAACCCAAAACCCGAAAAAACCCTCCCTCGGAT
TTTCTTTATTTTTCCCTCCTACTTTTTTCCCTAAAAGGGGGGCCCCCCCC
CCGGGGGGGTTTAAAATTTTTTTTTGG
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