DY258387
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_STRMK (Ribosomal RNA large subunit methyltransferase E OS=Stenotrophomonas maltophilia (strain K279a) GN=rlmE PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 7.518e-18 Identity = 62/200 (31.00%), Postives = 102/200 (51.00%), Query Frame = 3 Query: 231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC----KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 D + +KA+ EG R+R+A+KL ++ E + + VVDL AAPG WSQ + R++ GD ++A+D+ M P+ GV + GD E V+ F+ DLV+ D AP+ +G+ +D+ L L + LK GG F+ K+F+G+ ++ + V+ KP++SR S E +A+ Sbjct: 18 DPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQVRRQI------------GDTGRVLALDILDMPPLAGVEFLHGDFRE----EAVLSQFEAMLGDQPVDLVLSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMRRRYDKVSIRKPEASRKRSPEVYAL 201
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_STRM5 (Ribosomal RNA large subunit methyltransferase E OS=Stenotrophomonas maltophilia (strain R551-3) GN=rlmE PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 7.518e-18 Identity = 62/200 (31.00%), Postives = 102/200 (51.00%), Query Frame = 3 Query: 231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC----KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 D + +KA+ EG R+R+A+KL ++ E + + VVDL AAPG WSQ + R++ GD ++A+D+ M P+ GV + GD E V+ F+ DLV+ D AP+ +G+ +D+ L L + LK GG F+ K+F+G+ ++ + V+ KP++SR S E +A+ Sbjct: 18 DPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQVRRQI------------GDTGRVLALDILDMPPLAGVEFLHGDFRE----ETVLSQFEAMLGDQPVDLVLSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMRRRYDKVSIRKPEASRKRSPEVYAL 201
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_PHOPR (Ribosomal RNA large subunit methyltransferase E OS=Photobacterium profundum GN=rlmE PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 7.518e-18 Identity = 57/196 (29.08%), Postives = 95/196 (48.47%), Query Frame = 3 Query: 231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 D Y ++A++ G+R+R+ FK+ +I ++ + + VVDL AAPG WSQ + + GD ++A D+ M + GV +QGD ++ D+V+ D AP+++G D+ L+ L + VL G F K+F+G+ +++ F VV KP SSR+ S E + V Sbjct: 20 DKYVQEAQKRGYRSRAIFKIEEIQKKDKLLKPGMTVVDLGAAPGGWSQYAAEVV------------GDEGQVIACDILSMDSLPGVSFLQGDFREEAVLSALLERIQPDMVDVVLSDMAPNMSGNLASDQPRAMYLVELALEMCKQVLAPNGSFAVKVFQGEGFDQYLAEIRNMFKVVKIRKPDSSRDRSREVYIV 203
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_DESAA (Ribosomal RNA large subunit methyltransferase E OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rlmE PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 9.819e-18 Identity = 65/201 (32.34%), Postives = 101/201 (50.25%), Query Frame = 3 Query: 228 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-APIEGVIQ-VQGDITNARTAEVVIRHFD--GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 RD Y KA++ G+ ARS FKL ++ + + I ++V+DL APGSW + S+ + GD ++ +DL+PM P + Q +QGD E+ D G D+V+ D AP+ TG+ ++D + L + L VLK GG F+ KIF+G+ +K +F KP+S+R S E + V Sbjct: 12 RDHYTDKAQKAGFPARSVFKLEEMQKRWKILRPGQKVLDLGCAPGSWLKYASQIV------------GDSGRVIGLDLKPMDQPDKPNAQFIQGD-----AFELTQEFLDEIGRDFDVVLSDMAPNTTGIKNVDALKSAALCESALAAAVTVLKPGGSFVCKIFQGEGFDAFIKDVKKYFTKHKIFKPESTRKQSREIYVV 195
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_NITMS (Ribosomal RNA large subunit methyltransferase E OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmE PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.187e-17 Identity = 62/201 (30.85%), Postives = 103/201 (51.24%), Query Frame = 3 Query: 222 DKRDIYYRK-AKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 821 D R +YRK A E+G+R+R+A+KL ++++ + I V+DL APG W+Q + KL+ G+ ++ IDL + I G ++GDI + + V+ +F+ K + V+CD +P V+G +D Q L ++ VL G + K+F G+ + +K F + KPK+SR S E + VC Sbjct: 5 DARKDHYRKLAHEQGFRSRAAYKLKELNQSYRIIGPGFYVLDLGCAPGGWTQ-------MAIKLA-----GNQGKVMGIDLSYVEEIPGAEILRGDIEDENVVDDVMNYFER-KVNAVICDLSPKVSGNWSVDHAKQISLNYDCTKIMDKVLAHKGNAVFKVFDGEYSMEFRDYVKKKFARINLTKPKASRKQSSELYYVC 192
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_XANOR (Ribosomal RNA large subunit methyltransferase E OS=Xanthomonas oryzae pv. oryzae GN=rlmE PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17 Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3 Query: 231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 D Y +KA+ EG R+R+A+KL ++ + + + VVDL AAPG WSQ + + + GD +VA+D+ M + GV + GD DLV+ D AP+ +G+ +D+ L + LK GG F+ K+F+G + +L+ + VT KP +SR S E +A+ Sbjct: 18 DPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQQVRKSM------------GDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKVTIRKPAASRKRSPEVYAL 201
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_XANOP (Ribosomal RNA large subunit methyltransferase E OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rlmE PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17 Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3 Query: 231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 D Y +KA+ EG R+R+A+KL ++ + + + VVDL AAPG WSQ + + + GD +VA+D+ M + GV + GD DLV+ D AP+ +G+ +D+ L + LK GG F+ K+F+G + +L+ + VT KP +SR S E +A+ Sbjct: 18 DPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQQVRKSM------------GDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKVTIRKPAASRKRSPEVYAL 201
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_XANOM (Ribosomal RNA large subunit methyltransferase E OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rlmE PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17 Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3 Query: 231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 D Y +KA+ EG R+R+A+KL ++ + + + VVDL AAPG WSQ + + + GD +VA+D+ M + GV + GD DLV+ D AP+ +G+ +D+ L + LK GG F+ K+F+G + +L+ + VT KP +SR S E +A+ Sbjct: 18 DPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQQVRKSM------------GDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKVTIRKPAASRKRSPEVYAL 201
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_ACTPJ (Ribosomal RNA large subunit methyltransferase E OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rlmE PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17 Identity = 59/197 (29.95%), Postives = 95/197 (48.22%), Query Frame = 3 Query: 228 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 +D + +KA ++ R+R+ FKL +I + +F+ VVDL AAPG WSQ Y ++ R I+A D+ M PI GV +QGD ++ D+V+ D AP+ +G+ +D L+ L + VL G F+ K+F+G+ ++ F V KP++SR+ S E + V Sbjct: 18 KDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQ------YAVTQIGSKGR------IIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIRAMFTTVKVRKPEASRDRSREVYIV 202
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_ACTP7 (Ribosomal RNA large subunit methyltransferase E OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rlmE PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17 Identity = 59/197 (29.95%), Postives = 95/197 (48.22%), Query Frame = 3 Query: 228 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 +D + +KA ++ R+R+ FKL +I + +F+ VVDL AAPG WSQ Y ++ R I+A D+ M PI GV +QGD ++ D+V+ D AP+ +G+ +D L+ L + VL G F+ K+F+G+ ++ F V KP++SR+ S E + V Sbjct: 18 KDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQ------YAVTQIGSKGR------IIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIRAMFTTVKVRKPEASRDRSREVYIV 202 The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 433
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bpback to top |