DY258387

Overview
NameDY258387
Unique NameDY258387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_STRMK (Ribosomal RNA large subunit methyltransferase E OS=Stenotrophomonas maltophilia (strain K279a) GN=rlmE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.518e-18
Identity = 62/200 (31.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC----KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D + +KA+ EG R+R+A+KL ++ E   + +    VVDL AAPG WSQ + R++            GD   ++A+D+  M P+ GV  + GD       E V+  F+        DLV+ D AP+ +G+  +D+     L    L    + LK GG F+ K+F+G+        ++  +  V+  KP++SR  S E +A+
Sbjct:   18 DPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQVRRQI------------GDTGRVLALDILDMPPLAGVEFLHGDFRE----EAVLSQFEAMLGDQPVDLVLSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMRRRYDKVSIRKPEASRKRSPEVYAL 201          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_STRM5 (Ribosomal RNA large subunit methyltransferase E OS=Stenotrophomonas maltophilia (strain R551-3) GN=rlmE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.518e-18
Identity = 62/200 (31.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC----KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D + +KA+ EG R+R+A+KL ++ E   + +    VVDL AAPG WSQ + R++            GD   ++A+D+  M P+ GV  + GD       E V+  F+        DLV+ D AP+ +G+  +D+     L    L    + LK GG F+ K+F+G+        ++  +  V+  KP++SR  S E +A+
Sbjct:   18 DPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQVRRQI------------GDTGRVLALDILDMPPLAGVEFLHGDFRE----ETVLSQFEAMLGDQPVDLVLSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMRRRYDKVSIRKPEASRKRSPEVYAL 201          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_PHOPR (Ribosomal RNA large subunit methyltransferase E OS=Photobacterium profundum GN=rlmE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.518e-18
Identity = 57/196 (29.08%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D Y ++A++ G+R+R+ FK+ +I ++  + +    VVDL AAPG WSQ  +  +            GD   ++A D+  M  + GV  +QGD         ++        D+V+ D AP+++G    D+     L+   L +   VL   G F  K+F+G+       +++  F VV   KP SSR+ S E + V
Sbjct:   20 DKYVQEAQKRGYRSRAIFKIEEIQKKDKLLKPGMTVVDLGAAPGGWSQYAAEVV------------GDEGQVIACDILSMDSLPGVSFLQGDFREEAVLSALLERIQPDMVDVVLSDMAPNMSGNLASDQPRAMYLVELALEMCKQVLAPNGSFAVKVFQGEGFDQYLAEIRNMFKVVKIRKPDSSRDRSREVYIV 203          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_DESAA (Ribosomal RNA large subunit methyltransferase E OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rlmE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.819e-18
Identity = 65/201 (32.34%), Postives = 101/201 (50.25%), Query Frame = 3
Query:  228 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-APIEGVIQ-VQGDITNARTAEVVIRHFD--GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            RD Y  KA++ G+ ARS FKL ++ + + I    ++V+DL  APGSW +  S+ +            GD   ++ +DL+PM  P +   Q +QGD       E+     D  G   D+V+ D AP+ TG+ ++D    + L  + L     VLK GG F+ KIF+G+        +K +F      KP+S+R  S E + V
Sbjct:   12 RDHYTDKAQKAGFPARSVFKLEEMQKRWKILRPGQKVLDLGCAPGSWLKYASQIV------------GDSGRVIGLDLKPMDQPDKPNAQFIQGD-----AFELTQEFLDEIGRDFDVVLSDMAPNTTGIKNVDALKSAALCESALAAAVTVLKPGGSFVCKIFQGEGFDAFIKDVKKYFTKHKIFKPESTRKQSREIYVV 195          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_NITMS (Ribosomal RNA large subunit methyltransferase E OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.187e-17
Identity = 62/201 (30.85%), Postives = 103/201 (51.24%), Query Frame = 3
Query:  222 DKRDIYYRK-AKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 821
            D R  +YRK A E+G+R+R+A+KL ++++ + I      V+DL  APG W+Q       +  KL+     G+   ++ IDL  +  I G   ++GDI +    + V+ +F+  K + V+CD +P V+G   +D   Q  L      ++  VL   G  + K+F G+ +      +K  F  +   KPK+SR  S E + VC
Sbjct:    5 DARKDHYRKLAHEQGFRSRAAYKLKELNQSYRIIGPGFYVLDLGCAPGGWTQ-------MAIKLA-----GNQGKVMGIDLSYVEEIPGAEILRGDIEDENVVDDVMNYFER-KVNAVICDLSPKVSGNWSVDHAKQISLNYDCTKIMDKVLAHKGNAVFKVFDGEYSMEFRDYVKKKFARINLTKPKASRKQSSELYYVC 192          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_XANOR (Ribosomal RNA large subunit methyltransferase E OS=Xanthomonas oryzae pv. oryzae GN=rlmE PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D Y +KA+ EG R+R+A+KL ++ +   + +    VVDL AAPG WSQ + + +            GD   +VA+D+  M  + GV  + GD                   DLV+ D AP+ +G+  +D+     L    +      LK GG F+ K+F+G  +     +L+  +  VT  KP +SR  S E +A+
Sbjct:   18 DPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQQVRKSM------------GDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKVTIRKPAASRKRSPEVYAL 201          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_XANOP (Ribosomal RNA large subunit methyltransferase E OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rlmE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D Y +KA+ EG R+R+A+KL ++ +   + +    VVDL AAPG WSQ + + +            GD   +VA+D+  M  + GV  + GD                   DLV+ D AP+ +G+  +D+     L    +      LK GG F+ K+F+G  +     +L+  +  VT  KP +SR  S E +A+
Sbjct:   18 DPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQQVRKSM------------GDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKVTIRKPAASRKRSPEVYAL 201          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_XANOM (Ribosomal RNA large subunit methyltransferase E OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rlmE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D Y +KA+ EG R+R+A+KL ++ +   + +    VVDL AAPG WSQ + + +            GD   +VA+D+  M  + GV  + GD                   DLV+ D AP+ +G+  +D+     L    +      LK GG F+ K+F+G  +     +L+  +  VT  KP +SR  S E +A+
Sbjct:   18 DPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGWSQQVRKSM------------GDSGRVVALDILDMPALAGVEFLHGDFREQAVLSQFEAMLGDVPVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIRELRRRYEKVTIRKPAASRKRSPEVYAL 201          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_ACTPJ (Ribosomal RNA large subunit methyltransferase E OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rlmE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17
Identity = 59/197 (29.95%), Postives = 95/197 (48.22%), Query Frame = 3
Query:  228 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            +D + +KA ++  R+R+ FKL +I +   +F+    VVDL AAPG WSQ      Y   ++    R      I+A D+  M PI GV  +QGD         ++        D+V+ D AP+ +G+  +D      L+   L +   VL   G F+ K+F+G+        ++  F  V   KP++SR+ S E + V
Sbjct:   18 KDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQ------YAVTQIGSKGR------IIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIRAMFTTVKVRKPEASRDRSREVYIV 202          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_ACTP7 (Ribosomal RNA large subunit methyltransferase E OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rlmE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.873e-17
Identity = 59/197 (29.95%), Postives = 95/197 (48.22%), Query Frame = 3
Query:  228 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            +D + +KA ++  R+R+ FKL +I +   +F+    VVDL AAPG WSQ      Y   ++    R      I+A D+  M PI GV  +QGD         ++        D+V+ D AP+ +G+  +D      L+   L +   VL   G F+ K+F+G+        ++  F  V   KP++SR+ S E + V
Sbjct:   18 KDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQ------YAVTQIGSKGR------IIACDILDMNPIVGVDFLQGDFREESVLNALLERVGDDMVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLAPKGSFVVKVFQGEGFDDYLRDIRAMFTTVKVRKPEASRDRSREVYIV 202          
The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RLME_STRMK7.518e-1831.00Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_STRM57.518e-1831.00Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_PHOPR7.518e-1829.08Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_DESAA9.819e-1832.34Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_NITMS2.187e-1730.85Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_XANOR4.873e-1730.10Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_XANOP4.873e-1730.10Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_XANOM4.873e-1730.10Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ACTPJ4.873e-1729.95Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_ACTP74.873e-1729.95Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bp
GAGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCA
GGGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCT
TTCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGT
GCAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTAT
ATCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGC
AAAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAG
ACGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGT
GCTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCC
GGCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGG
CTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAG
GGTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGA
TGGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTG
GCCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGT
TTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAA
GATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTAT
TTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGC
ATAGAGGCATTCGCTGTTTGTGAGATTATTCCCCTCCTGAAGGATTTAAC
CCAAAGATTTGCCCCGCCTTTTGGAAAAAGTGGAAACCCCCTGGGAAGAA
AGGATCCAGATTGCGATAATGGTTGGTTGGAAAGACCAAATAAAGGTTAC
TCCCCCTTTTTACCTGGCGGGGCCCCAAAGGGTATGAATCCCAACCGTTC
CTTACCCCTGCCCAAAGTTGCCGACGGAACCATACAAAACTTGGATTCCC
GCCCCCCCCCCTTTGCCCCCCCTTAAAAAAAAACCCTGGGAAAGAAAAAA
ACCTTCCCCCCCAGGGGTAACCCAAAACCCGAAAAAACCCTCCCTCGGAT
TTTCTTTATTTTTCCCTCCTACTTTTTTCCCTAAAAGGGGGGCCCCCCCC
CCGGGGGGGTTTAAAATTTTTTTTTGG
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