DY258387

Overview
NameDY258387
Unique NameDY258387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_WIGBR (Ribosomal RNA large subunit methyltransferase E OS=Wigglesworthia glossinidia brevipalpis GN=rlmE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.720e-12
Identity = 52/196 (26.53%), Postives = 99/196 (50.51%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D + +++K+  +R+R+ FK+ +I ++ NI +    V+D+ ++PG WS+  S+K+ +  K            ++A D+  M PI  V  + G+I    T + + +     K  +++CD +P++TGL  +D      L    L +  ++L + GK I K F   +      +++  F  +   KP SSR+ S E + V
Sbjct:   16 DKFVKESKKCKYRSRAWFKIDEIQKKNNIIKPGMVVLDIGSSPGGWSKYSSQKVGMSGK------------VIACDIDLMNPIPNVSFILGNIFEKITIKKIKKVKK--KVHIILCDISPNITGLSIIDHSRWISLNNNILNICKYLLLKNGKLIIKSFNSVEIKNFCKKIENSFKKIKIFKPISSRSRSKEIYIV 197          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_DESOH (Ribosomal RNA large subunit methyltransferase E OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rlmE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.373e-11
Identity = 60/205 (29.27%), Postives = 89/205 (43.41%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PIEGVIQVQGDITNARTAEVVIRHFDGC--KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y RKAK E + ARS +KL +I ++ N+ +    V+DL   PGSW    +  +    K            +  IDL+ +A   P +    +Q DI      E+      G     D+V+ D APD  G    D      L  A L +   +LK GG F+ K+F+G+D       +K  F      KP++ R  S E + +
Sbjct:    9 RKTPDHYARKAKTEHYPARSVYKLQEIQKKHNVLKPGNAVLDLGCFPGSWMMFAAETVGRGGK------------VTGIDLKKVATHMPAQAT-SLQEDI-----YEIDREALAGTLGPLDVVLSDMAPDTMGNKFTDAARSFHLAAAALDLALFLLKPGGHFVCKVFQGEDFQNFVNMVKAEFERHKVFKPETCRKDSKETYVI 195          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_DESPS (Ribosomal RNA large subunit methyltransferase E OS=Desulfotalea psychrophila GN=rlmE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.902e-11
Identity = 59/208 (28.37%), Postives = 88/208 (42.31%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ--------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y +KAK++ + ARS +KL +  ++++I      ++DL   PGSWS      +Y      P        ++V +DLQ          API  + +   DI      E V R     +  +++ D AP  TG    D      L    L +   VL   G +I K+F+G D       +K  F      KP+SSR  S E F +
Sbjct:    2 RKINDYYAKKAKKDNYPARSIYKLEEAQKKYDIISRGDSILDLGCFPGSWS------IYASELAGPKG------IVVGVDLQQAVGGGRADAAPIHWICE---DIREPAMLEAVRRIRPSFR--VLISDMAPKTTGNRWTDAQQSLNLCYQTLEIAEQVLLNKGNYICKVFQGGDFPDFVDAVKKRFESARVIKPQSSRIESREVFVL 192          
The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RLME_WIGBR4.720e-1226.53Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_DESOH1.373e-1129.27Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_DESPS8.902e-1128.37Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bp
GAGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCA
GGGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCT
TTCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGT
GCAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTAT
ATCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGC
AAAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAG
ACGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGT
GCTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCC
GGCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGG
CTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAG
GGTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGA
TGGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTG
GCCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGT
TTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAA
GATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTAT
TTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGC
ATAGAGGCATTCGCTGTTTGTGAGATTATTCCCCTCCTGAAGGATTTAAC
CCAAAGATTTGCCCCGCCTTTTGGAAAAAGTGGAAACCCCCTGGGAAGAA
AGGATCCAGATTGCGATAATGGTTGGTTGGAAAGACCAAATAAAGGTTAC
TCCCCCTTTTTACCTGGCGGGGCCCCAAAGGGTATGAATCCCAACCGTTC
CTTACCCCTGCCCAAAGTTGCCGACGGAACCATACAAAACTTGGATTCCC
GCCCCCCCCCCTTTGCCCCCCCTTAAAAAAAAACCCTGGGAAAGAAAAAA
ACCTTCCCCCCCAGGGGTAACCCAAAACCCGAAAAAACCCTCCCTCGGAT
TTTCTTTATTTTTCCCTCCTACTTTTTTCCCTAAAAGGGGGGCCCCCCCC
CCGGGGGGGTTTAAAATTTTTTTTTGG
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