DY258387

Overview
NameDY258387
Unique NameDY258387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_PSEHT (Ribosomal RNA large subunit methyltransferase E OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.083e-24
Identity = 64/196 (32.65%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D Y ++A+++GWR+R+ FKL ++     +      VVDL AAPGSWSQ L+ K+            GD   ++A D+ PM  + GV  +QGD         +++  DG   D+V+ D AP+++G + +D+     L+   L +   VLK+ G FI K+F+G+        ++  F  V   KP +SR  S E + V
Sbjct:   20 DKYVQEAQKKGWRSRAVFKLDEVQSRDKLLRPAMTVVDLGAAPGSWSQYLAEKV------------GDKGQVIACDILPMDSLAGVDFLQGDFREEAVLSALLKRIDGKNVDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQFLQDVRNSFKTVKIRKPDASRARSREVYIV 203          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_METFK (Ribosomal RNA large subunit methyltransferase E OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.083e-24
Identity = 64/194 (32.99%), Postives = 107/194 (55.15%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812
            D + ++A+ +G+RAR+A+KLL+ID++  + +    +VDL +APGSWSQV  ++L    +            ++A+D+  M PI GV  +QGD        V+ +  +G   DLV+ D AP+++G+ D+D+   + L+   L      LK GG F+ K+F G     +   ++  F  V   KPK+SR+ S E +
Sbjct:   17 DEFVKRAQRDGYRARAAYKLLEIDDKDQLIKPGMTIVDLGSAPGSWSQVAVQRLAGQGR------------VIALDILEMPPIPGVEFIQGDFREEEILLVLEKSLNGKPVDLVIADMAPNISGISDVDQARAAYLVELALEFSREWLKPGGNFLVKVFVGSGFDEIVMAMRDSFEKVVTRKPKASRDRSSEVY 198          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICBR (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia bellii (strain RML369-C) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.415e-24
Identity = 78/201 (38.81%), Postives = 105/201 (52.24%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  KA+ EG+R+R+A+KLL+I E+F IF    +VVDL AAPG WSQV S+ +         + +G+L   I+++DL  + PI GV   Q D     T E++I+   G KAD+V+ D A +  G    D      L          VL   G FIAKIFRG   + L  ++K  F  V   KP SSR  S E + V
Sbjct:   31 RQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKIFTPNMKVVDLGAAPGGWSQVASKLI--------KATDGNLKNKIISVDLLEIEPIPGVESFQKDFFEKDTEELIIQALKG-KADIVLSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLNPSGHFIAKIFRGGAENELLNKVKREFSTVKHFKPSSSRKESTEIYLV 222          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICB8 (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia bellii (strain OSU 85-389) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.415e-24
Identity = 78/201 (38.81%), Postives = 105/201 (52.24%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  KA+ EG+R+R+A+KLL+I E+F IF    +VVDL AAPG WSQV S+ +         + +G+L   I+++DL  + PI GV   Q D     T E++I+   G KAD+V+ D A +  G    D      L          VL   G FIAKIFRG   + L  ++K  F  V   KP SSR  S E + V
Sbjct:   31 RQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKIFTPNMKVVDLGAAPGGWSQVASKLI--------KATDGNLKNKIISVDLLEIEPIPGVESFQKDFFEKDTEELIIQALKG-KADIVLSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLNPSGHFIAKIFRGGAENELLNKVKREFSTVKHFKPSSSRKESTEIYLV 222          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICAE (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia africae (strain ESF-5) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.415e-24
Identity = 76/200 (38.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  KA+ +G+R+R+A+KLL+I E+F +F    ++VDL AAPG WSQV S+ +    K S ++       I++ID+  +  + GV  VQ D   A T E++I+  DG +AD+V+ D A +  G    D      L          VLK  G FIAKIFRG   + L  ++K  F  V   KP SSR+ S E + V
Sbjct:   31 RQLNDPYVAKARMDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLI----KASDNNLNNK---IISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDG-RADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLYKVKREFKTVKHFKPSSSRSESTEIYLV 222          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICRS (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia rickettsii (strain Sheila Smith) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24
Identity = 77/200 (38.50%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  KA+ +G+R+R+A+KLL+I E+F +F    +VVDL AAPG WSQV S+ +    K S ++       I++ID+  +  + GV  VQ D   A T E++I+  DG +AD+V+ D A +  G    D      L          VLK  G FIAKIFRG   + L  ++K  F  V   KP SSR+ S E + V
Sbjct:   31 RQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKVVDLGAAPGGWSQVASKLI----KASDNNLNNK---IISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDG-RADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLV 222          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICRO (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia rickettsii (strain Iowa) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24
Identity = 77/200 (38.50%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  KA+ +G+R+R+A+KLL+I E+F +F    +VVDL AAPG WSQV S+ +    K S ++       I++ID+  +  + GV  VQ D   A T E++I+  DG +AD+V+ D A +  G    D      L          VLK  G FIAKIFRG   + L  ++K  F  V   KP SSR+ S E + V
Sbjct:   31 RQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKVVDLGAAPGGWSQVASKLI----KASDNNLNNK---IISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDG-RADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLV 222          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICCK (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia canadensis (strain McKiel) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24
Identity = 77/200 (38.50%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  KA+ +G+R+R+A+KLL+I E+F +F    ++VDL AAPG WSQ+ S+ +    K S +S       I++IDL  + PI GV   Q D     T +++I+  DG KA++V+ D A +  G    D      L    L     VLK  G FIAKIFRG   + L  ++K  F  V   KP SSR+ S E + V
Sbjct:   31 RQLNDPYVAKARTQGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQIASKLI----KASDNSLNNK---IISIDLLEIRPIVGVEFFQKDFFEEDTEKLIIQALDG-KANIVMSDMASNTIGHKATDHIRTLLLCEQALEFALKVLKPSGHFIAKIFRGGAENKLLNKVKHEFRTVKHFKPLSSRSESTEIYLV 222          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RHIME (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium meliloti GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24
Identity = 76/202 (37.62%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            R   D Y ++A+ EG+RAR+AFKLL+IDE+  I    KR++DL AAPGSWSQ+ ++          +S + D P + AID   M PI GV  +Q D  +    E + +   G   D+V+ D A   TG    D      L          VL EGG F+AK F+G     L   LK  F  V   KP SSR  S+E F + +
Sbjct:   34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGAKRIIDLGAAPGSWSQIAAK--------VTNSTDAD-PRVAAIDFLEMDPIPGVRFLQMDFLDPEAPENLKQAIGGA-PDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLAKTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAK 225          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RHILW (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rlmE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24
Identity = 74/202 (36.63%), Postives = 101/202 (50.00%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            R   D Y ++A+ EG+RAR+AFKLL+IDE+ +I    KR++DL AAPGSWSQ+ ++   +      D R      + AID   MA + GV  +Q D  +    E ++    G   DLV+ D A   TG H  D      L          VL EGG F+ K F+G     L   LK  F  V   KP +SR  S+E F + +
Sbjct:   34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGAKRIIDLGAAPGSWSQIAAK---VTGSTDEDIR------VAAIDFLEMAQLPGVKILQLDFLDPTAPEKLLEAVGG-TPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAQFAVEVLGEGGHFLTKTFQGGTERELLAMLKQNFRQVVHVKPNASRAESVEMFLLAK 225          
The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RLME_PSEHT1.083e-2432.65Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_METFK1.083e-2432.99Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RICBR1.415e-2438.81Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RICB81.415e-2438.81Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RICAE1.415e-2438.00Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RICRS1.848e-2438.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RICRO1.848e-2438.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RICCK1.848e-2438.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RHIME1.848e-2437.62Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RHILW1.848e-2436.63Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bp
GAGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCA
GGGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCT
TTCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGT
GCAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTAT
ATCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGC
AAAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAG
ACGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGT
GCTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCC
GGCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGG
CTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAG
GGTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGA
TGGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTG
GCCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGT
TTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAA
GATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTAT
TTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGC
ATAGAGGCATTCGCTGTTTGTGAGATTATTCCCCTCCTGAAGGATTTAAC
CCAAAGATTTGCCCCGCCTTTTGGAAAAAGTGGAAACCCCCTGGGAAGAA
AGGATCCAGATTGCGATAATGGTTGGTTGGAAAGACCAAATAAAGGTTAC
TCCCCCTTTTTACCTGGCGGGGCCCCAAAGGGTATGAATCCCAACCGTTC
CTTACCCCTGCCCAAAGTTGCCGACGGAACCATACAAAACTTGGATTCCC
GCCCCCCCCCCTTTGCCCCCCCTTAAAAAAAAACCCTGGGAAAGAAAAAA
ACCTTCCCCCCCAGGGGTAACCCAAAACCCGAAAAAACCCTCCCTCGGAT
TTTCTTTATTTTTCCCTCCTACTTTTTTCCCTAAAAGGGGGGCCCCCCCC
CCGGGGGGGTTTAAAATTTTTTTTTGG
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