DY258387
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_PSEHT (Ribosomal RNA large subunit methyltransferase E OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.083e-24 Identity = 64/196 (32.65%), Postives = 102/196 (52.04%), Query Frame = 3 Query: 231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 D Y ++A+++GWR+R+ FKL ++ + VVDL AAPGSWSQ L+ K+ GD ++A D+ PM + GV +QGD +++ DG D+V+ D AP+++G + +D+ L+ L + VLK+ G FI K+F+G+ ++ F V KP +SR S E + V Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEVQSRDKLLRPAMTVVDLGAAPGSWSQYLAEKV------------GDKGQVIACDILPMDSLAGVDFLQGDFREEAVLSALLKRIDGKNVDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQFLQDVRNSFKTVKIRKPDASRARSREVYIV 203
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_METFK (Ribosomal RNA large subunit methyltransferase E OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.083e-24 Identity = 64/194 (32.99%), Postives = 107/194 (55.15%), Query Frame = 3 Query: 231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812 D + ++A+ +G+RAR+A+KLL+ID++ + + +VDL +APGSWSQV ++L + ++A+D+ M PI GV +QGD V+ + +G DLV+ D AP+++G+ D+D+ + L+ L LK GG F+ K+F G + ++ F V KPK+SR+ S E + Sbjct: 17 DEFVKRAQRDGYRARAAYKLLEIDDKDQLIKPGMTIVDLGSAPGSWSQVAVQRLAGQGR------------VIALDILEMPPIPGVEFIQGDFREEEILLVLEKSLNGKPVDLVIADMAPNISGISDVDQARAAYLVELALEFSREWLKPGGNFLVKVFVGSGFDEIVMAMRDSFEKVVTRKPKASRDRSSEVY 198
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICBR (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia bellii (strain RML369-C) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.415e-24 Identity = 78/201 (38.81%), Postives = 105/201 (52.24%), Query Frame = 3 Query: 219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 R D Y KA+ EG+R+R+A+KLL+I E+F IF +VVDL AAPG WSQV S+ + + +G+L I+++DL + PI GV Q D T E++I+ G KAD+V+ D A + G D L VL G FIAKIFRG + L ++K F V KP SSR S E + V Sbjct: 31 RQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKIFTPNMKVVDLGAAPGGWSQVASKLI--------KATDGNLKNKIISVDLLEIEPIPGVESFQKDFFEKDTEELIIQALKG-KADIVLSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLNPSGHFIAKIFRGGAENELLNKVKREFSTVKHFKPSSSRKESTEIYLV 222
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICB8 (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia bellii (strain OSU 85-389) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.415e-24 Identity = 78/201 (38.81%), Postives = 105/201 (52.24%), Query Frame = 3 Query: 219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 R D Y KA+ EG+R+R+A+KLL+I E+F IF +VVDL AAPG WSQV S+ + + +G+L I+++DL + PI GV Q D T E++I+ G KAD+V+ D A + G D L VL G FIAKIFRG + L ++K F V KP SSR S E + V Sbjct: 31 RQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKIFTPNMKVVDLGAAPGGWSQVASKLI--------KATDGNLKNKIISVDLLEIEPIPGVESFQKDFFEKDTEELIIQALKG-KADIVLSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLNPSGHFIAKIFRGGAENELLNKVKREFSTVKHFKPSSSRKESTEIYLV 222
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICAE (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia africae (strain ESF-5) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.415e-24 Identity = 76/200 (38.00%), Postives = 108/200 (54.00%), Query Frame = 3 Query: 219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 R D Y KA+ +G+R+R+A+KLL+I E+F +F ++VDL AAPG WSQV S+ + K S ++ I++ID+ + + GV VQ D A T E++I+ DG +AD+V+ D A + G D L VLK G FIAKIFRG + L ++K F V KP SSR+ S E + V Sbjct: 31 RQLNDPYVAKARMDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLI----KASDNNLNNK---IISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDG-RADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLYKVKREFKTVKHFKPSSSRSESTEIYLV 222
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICRS (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia rickettsii (strain Sheila Smith) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24 Identity = 77/200 (38.50%), Postives = 108/200 (54.00%), Query Frame = 3 Query: 219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 R D Y KA+ +G+R+R+A+KLL+I E+F +F +VVDL AAPG WSQV S+ + K S ++ I++ID+ + + GV VQ D A T E++I+ DG +AD+V+ D A + G D L VLK G FIAKIFRG + L ++K F V KP SSR+ S E + V Sbjct: 31 RQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKVVDLGAAPGGWSQVASKLI----KASDNNLNNK---IISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDG-RADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLV 222
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICRO (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia rickettsii (strain Iowa) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24 Identity = 77/200 (38.50%), Postives = 108/200 (54.00%), Query Frame = 3 Query: 219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 R D Y KA+ +G+R+R+A+KLL+I E+F +F +VVDL AAPG WSQV S+ + K S ++ I++ID+ + + GV VQ D A T E++I+ DG +AD+V+ D A + G D L VLK G FIAKIFRG + L ++K F V KP SSR+ S E + V Sbjct: 31 RQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKVVDLGAAPGGWSQVASKLI----KASDNNLNNK---IISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDG-RADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLV 222
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICCK (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia canadensis (strain McKiel) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24 Identity = 77/200 (38.50%), Postives = 108/200 (54.00%), Query Frame = 3 Query: 219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818 R D Y KA+ +G+R+R+A+KLL+I E+F +F ++VDL AAPG WSQ+ S+ + K S +S I++IDL + PI GV Q D T +++I+ DG KA++V+ D A + G D L L VLK G FIAKIFRG + L ++K F V KP SSR+ S E + V Sbjct: 31 RQLNDPYVAKARTQGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQIASKLI----KASDNSLNNK---IISIDLLEIRPIVGVEFFQKDFFEEDTEKLIIQALDG-KANIVMSDMASNTIGHKATDHIRTLLLCEQALEFALKVLKPSGHFIAKIFRGGAENKLLNKVKHEFRTVKHFKPLSSRSESTEIYLV 222
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RHIME (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium meliloti GN=rlmE PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24 Identity = 76/202 (37.62%), Postives = 102/202 (50.50%), Query Frame = 3 Query: 219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824 R D Y ++A+ EG+RAR+AFKLL+IDE+ I KR++DL AAPGSWSQ+ ++ +S + D P + AID M PI GV +Q D + E + + G D+V+ D A TG D L VL EGG F+AK F+G L LK F V KP SSR S+E F + + Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGAKRIIDLGAAPGSWSQIAAK--------VTNSTDAD-PRVAAIDFLEMDPIPGVRFLQMDFLDPEAPENLKQAIGGA-PDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLAKTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAK 225
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RHILW (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rlmE PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.848e-24 Identity = 74/202 (36.63%), Postives = 101/202 (50.00%), Query Frame = 3 Query: 219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824 R D Y ++A+ EG+RAR+AFKLL+IDE+ +I KR++DL AAPGSWSQ+ ++ + D R + AID MA + GV +Q D + E ++ G DLV+ D A TG H D L VL EGG F+ K F+G L LK F V KP +SR S+E F + + Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGAKRIIDLGAAPGSWSQIAAK---VTGSTDEDIR------VAAIDFLEMAQLPGVKILQLDFLDPTAPEKLLEAVGG-TPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAQFAVEVLGEGGHFLTKTFQGGTERELLAMLKQNFRQVVHVKPNASRAESVEMFLLAK 225 The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 433
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bpback to top |