DY258387

Overview
NameDY258387
Unique NameDY258387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RICPU (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia peacockii (strain Rustic) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.116e-24
Identity = 76/200 (38.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  KA+ +G+R+R+A+KLL+I E+F +F    ++VDL AAPG WSQV S+ +    K S ++       I++ID+  +  + GV  VQ D   A T E++I+  DG +AD+V+ D A +  G    D      L          VLK  G FIAKIFRG   + L  ++K  F  V   KP SSR+ S E + V
Sbjct:   31 RQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFIPNMKIVDLGAAPGGWSQVASKLI----KASDNNLNNK---IISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDG-RADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLV 222          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_HALMA (Ribosomal RNA large subunit methyltransferase E OS=Haloarcula marismortui GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.116e-24
Identity = 71/208 (34.13%), Postives = 110/208 (52.88%), Query Frame = 3
Query:  228 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEG----VIQVQGDITNARTAE---VVIRHFDGC--KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            +D YY +AK+EG+RARSA+KL Q+D+   +    + VVDL AAPG W QV + ++            G+   +V +D Q +  +E     V  V+GD+T   T +    ++   DG     D+V+ D AP++TG +D+D      L+     V T +L  GG F AK+F G+D   L   ++  F  V   +P +SR+SS E + V +
Sbjct:    4 KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAERI------------GERGTLVGVDRQTIDDLEDPEPTVEYVRGDMTEDSTKDEIREIVGESDGSGGPVDVVISDMAPNMTGQYDLDHARSVHLVRQAFEVATDLLDAGGDFCAKVFDGQDLDDLIADIEPEFEYVREVRPDASRDSSSELYLVAK 199          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_GLUOX (Ribosomal RNA large subunit methyltransferase E OS=Gluconobacter oxydans GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.116e-24
Identity = 67/201 (33.33%), Postives = 101/201 (50.25%), Query Frame = 3
Query:  216 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            +R   D Y   A+++GWR+R+AFKL++ID+ F +     R++DL AAPG W+QV  ++                  +V +DL P+ P+ G   ++GD T+    +  ++   G  ADLV+ D AP+ TG    D      L    L     VL EGG FIAK+F+G     +   +K  F  V   KP +SR  S E + +
Sbjct:   67 NRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFKLIGEGTRIIDLGAAPGGWTQVAVKR--------------GAKHVVGLDLLPVDPVAGAEIIEGDFTDPEMPD-RLKDMLGGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAFQVLAEGGSFIAKVFQGGSEKDMLALMKTAFSSVKHVKPPASRKESSELYVI 252          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RHIEC (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.375e-24
Identity = 75/202 (37.13%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            R   D Y ++A+ EG+RAR+AFKLL+IDE+++I    KR++DL AAPGSWSQ+ ++   +      D R      + AID   MA + GV  +Q D  +  +A   +    G   DLV+ D A   TG H  D      L          VL EGG F+ K F+G     L   LK  F  V   KP SSR  S+E F + +
Sbjct:   34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKYHILRGAKRIIDLGAAPGSWSQIAAK---VTGSTDEDIR------VAAIDFLEMAQLPGVWILQLDFLDP-SAPGKLMEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGHFLTKTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAK 225          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RALME (Ribosomal RNA large subunit methyltransferase E OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.375e-24
Identity = 72/199 (36.18%), Postives = 106/199 (53.27%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812
            D Y + A+ EG+RAR+A+KL +ID++  + +  + +VDL AAPGSWSQ    KL      SP +++G +   +VAID+ PM P+  V  +QGD        +  +VV+    G + DLV+ D AP+++G+   D      L    L      LK  G  + K F G   S +  + K  F VV   KPK+SR+ S E F
Sbjct:   17 DPYVKMAQREGYRARAAYKLKEIDDQDKLIQPGQVIVDLGAAPGSWSQYARNKL----AASPRAKDGRIDGAVVAIDILPMEPVADVTFIQGDFREEEVFRQLEQVVLDASGGSRIDLVISDMAPNLSGVASADAARIEYLCDLALDFAQAHLKPEGSLLVKCFHGSGYSQIVEKFKRQFKVVASRKPKASRDKSSETF 211          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_HAHCH (Ribosomal RNA large subunit methyltransferase E OS=Hahella chejuensis (strain KCTC 2396) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.375e-24
Identity = 64/198 (32.32%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            D+Y +K+KE+G+R+R+++KL+++D +  +      V+DL AAPG WSQV++  +            GD   +VA DL  M  I GV   QGD T     + ++   +    DLV+ D AP+++G+  +D      L+   L +   VLK+ G F+AK+F+G+    +  + +  F  V   KP +SR  S E + V +
Sbjct:   17 DVYVKKSKEDGFRSRASYKLIELDRQDKLLRPGMTVIDLGAAPGGWSQVVADVV------------GDQGKVVACDLLSMDSIAGVTFFQGDFTEDEMLDAILNEVNSRPVDLVISDMAPNMSGMKSVDIPKAMYLVELALDLACRVLKKNGCFVAKVFQGEGFDQILQESRGRFSSVNIRKPDASRARSREIYLVAK 202          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_AGRVS (Ribosomal RNA large subunit methyltransferase E OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.375e-24
Identity = 83/231 (35.93%), Postives = 111/231 (48.05%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEIIPLLKDLTQRFAPPFGKSGNPLGRKDPD 911
            R   D Y ++AK EG+RAR+AFKLL+IDE+ NI +  +R++DL AAPGSWSQ+        A     S + D+  + AID   M  + GV  +Q D  + +   +++    G   D+V+ D A   TG    D      L          VL EGG F+AK F+G     L   LK  F  V   KP SSR  S+E F       L K    R      +SGN LG +  D
Sbjct:   34 RHINDPYVQRAKLEGYRARAAFKLLEIDEKHNILKGARRIIDLGAAPGSWSQI--------AANVTGSTDSDI-RVAAIDFLEMTQLPGVKILQLDFLDPQAPALLMEAVGGV-PDVVISDMAAPTTGHQKTDHIRTMHLCEVAAYFAVEVLAEGGHFLAKTFQGGTEKDLLNMLKQNFKQVIHIKPASSRQESVEMFL------LAKGFKGR------RSGNALGHEVED 242          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_SACD2 (Ribosomal RNA large subunit methyltransferase E OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.021e-24
Identity = 65/198 (32.83%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            D Y + ++++G+R+R+++KL++++++  + ++ + VVDL AAPG WSQV ++ +            GD   +VA D+ PM  + GV  VQGD T     E ++      KADLV+ D AP+++G+ D+D+     L+   L +    LK GG F  K+F+G+    L    +  F  V   KP +SR  S E + V +
Sbjct:   17 DQYVKDSQKDGYRSRASYKLIELNDKDKLIKSGQTVVDLGAAPGGWSQVAAQIV------------GDGGRVVASDILPMDSLAGVDFVQGDFTEEAVLEQLLELLGEAKADLVISDMAPNMSGIADVDQPKSMYLVELALDMAKTTLKIGGSFACKVFQGEGFDELVLACRECFQKVLVRKPSASRPRSREVYIVAK 202          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RHISN (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium sp. (strain NGR234) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.021e-24
Identity = 75/202 (37.13%), Postives = 102/202 (50.50%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            R   D Y ++A+ EG+RAR+AFKLL+IDE+  I    +R++DL AAPGSWSQ+ ++          +S + D P + AID   M PI GV  +Q D  +    E  ++   G   DLV+ D A   TG    D      L          VL +GG F+AK F+G     L   LK  F  V   KP SSR  S+E F + +
Sbjct:   34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGARRIIDLGAAPGSWSQIAAK--------VTNSTDAD-PRVAAIDFLEMDPIPGVRFLQLDFLDPEAPE-KLKEAIGGTPDLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAKGGHFLAKTFQGGTERDLLNMLKQNFSQVIHVKPASSRTESVEMFLLAK 225          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RHIL3 (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.021e-24
Identity = 73/202 (36.14%), Postives = 100/202 (49.50%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            R   D Y ++A+ EG+RAR+AFKLL+IDE+ +I    +R++DL AAPGSWSQ+ ++   +      D R      + AID   M  + GV  +Q D  +    E ++    G   DLV+ D A   TG H  D      L          VL EGG F+ K F+G     L   LK  F  V   KP SSR  S+E F + +
Sbjct:   34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGARRIIDLGAAPGSWSQIAAK---VTGSTDDDIR------VAAIDFLEMTQLPGVKILQLDFLDPSAPEKLLEAVGG-TPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHFLTKTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAK 225          
The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RLME_RICPU4.116e-2438.00Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_HALMA4.116e-2434.13Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_GLUOX4.116e-2433.33Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RHIEC5.375e-2437.13Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RALME5.375e-2436.18Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_HAHCH5.375e-2432.32Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_AGRVS5.375e-2435.93Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_SACD27.021e-2432.83Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RHISN7.021e-2437.13Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RHIL37.021e-2436.14Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bp
GAGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCA
GGGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCT
TTCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGT
GCAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTAT
ATCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGC
AAAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAG
ACGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGT
GCTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCC
GGCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGG
CTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAG
GGTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGA
TGGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTG
GCCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGT
TTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAA
GATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTAT
TTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGC
ATAGAGGCATTCGCTGTTTGTGAGATTATTCCCCTCCTGAAGGATTTAAC
CCAAAGATTTGCCCCGCCTTTTGGAAAAAGTGGAAACCCCCTGGGAAGAA
AGGATCCAGATTGCGATAATGGTTGGTTGGAAAGACCAAATAAAGGTTAC
TCCCCCTTTTTACCTGGCGGGGCCCCAAAGGGTATGAATCCCAACCGTTC
CTTACCCCTGCCCAAAGTTGCCGACGGAACCATACAAAACTTGGATTCCC
GCCCCCCCCCCTTTGCCCCCCCTTAAAAAAAAACCCTGGGAAAGAAAAAA
ACCTTCCCCCCCAGGGGTAACCCAAAACCCGAAAAAACCCTCCCTCGGAT
TTTCTTTATTTTTCCCTCCTACTTTTTTCCCTAAAAGGGGGGCCCCCCCC
CCGGGGGGGTTTAAAATTTTTTTTTGG
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