DY258387

Overview
NameDY258387
Unique NameDY258387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_COXBU (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.021e-24
Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  225 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812
            ++D Y ++AK+EG+ +R+A+KLL+I +++ +F+    V+DL AAPG WSQV    +            G   +++AIDL PM  +  VI +QGD     I N   A V  +   G + DLV+ D AP+++G+ ++D+     L+         +L  GG F+ K+F+G         L+ +F  V F KP +SR+ S E +
Sbjct:   12 EKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_COXBN (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.021e-24
Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  225 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812
            ++D Y ++AK+EG+ +R+A+KLL+I +++ +F+    V+DL AAPG WSQV    +            G   +++AIDL PM  +  VI +QGD     I N   A V  +   G + DLV+ D AP+++G+ ++D+     L+         +L  GG F+ K+F+G         L+ +F  V F KP +SR+ S E +
Sbjct:   12 EKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_COXB2 (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain CbuG_Q212) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.021e-24
Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  225 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812
            ++D Y ++AK+EG+ +R+A+KLL+I +++ +F+    V+DL AAPG WSQV    +            G   +++AIDL PM  +  VI +QGD     I N   A V  +   G + DLV+ D AP+++G+ ++D+     L+         +L  GG F+ K+F+G         L+ +F  V F KP +SR+ S E +
Sbjct:   12 EKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_METM7 (Ribosomal RNA large subunit methyltransferase E OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.169e-24
Identity = 69/204 (33.82%), Postives = 111/204 (54.41%), Query Frame = 3
Query:  225 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGC---KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL-KLFFPVVTFAKPKSSRNSSIEAFAV 818
            K D YY  AK+  +R+R+ +KL Q++E+FN+ +    VVDL  APG W Q  +R +            G+   IV IDLQ + P+  E VI ++GD+T     E +++        K D+++CD +P+++G+ D+D     +L    L   T +LK+GG F+ K+F+G D    Y QL   +F      KP++SR+ S E + +
Sbjct:   13 KNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQA-ARDIV-----------GEKGFIVGIDLQTVKPLPYENVIAIKGDMTK----EEILKQAKDLLPEKPDVIICDASPNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQG-DLFEKYVQLVSEYFDKAFTTKPRASRDESAEVYVI 199          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_MAGSA (Ribosomal RNA large subunit methyltransferase E OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.169e-24
Identity = 75/200 (37.50%), Postives = 101/200 (50.50%), Query Frame = 3
Query:  219 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            R   D Y  +AK  G+R+R+AFK++Q+DE F+I +   RVVDL AAPG W+QV   K+     L P         +V +D+    P+ G I +QGD   A  A   ++   G  AD+V+ D A   TG    D      L+   L     VL  GG F+AK+F+G     L  QLK  F  V  AKP +SR  S E + V
Sbjct:   44 RQLNDPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQVAVEKV---GALKPKGG----GKVVGMDILEWDPLPGAITLQGDFL-ADDAPDRLKEALGGPADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGTEKTLLDQLKKNFTTVRHAKPPASRQGSAETYVV 235          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_COXBR (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.169e-24
Identity = 67/200 (33.50%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  228 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812
            +D Y ++AK+EG+ +R+A+KLL+I +++ +F+    V+DL AAPG WSQV    +            G   +++AIDL PM  +  VI +QGD     I N   A V  +   G + DLV+ D AP+++G+ ++D+     L+         +L  GG F+ K+F+G         L+ +F  V F KP +SR+ S E +
Sbjct:   13 KDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_RALSO (Ribosomal RNA large subunit methyltransferase E OS=Ralstonia solanacearum GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.198e-23
Identity = 72/199 (36.18%), Postives = 105/199 (52.76%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAE----VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812
            D Y + A+ EG+RAR+A+KL +IDE+  + +  + +VDL AAPGSWSQ +  KL      SP +++G +   IVAID+ PM P+  V  +QGD       +    +V+    G K DLV+ D AP+++G+   D      +    +      LK  G  + K F G   S +    K  F VV   KPK+SR+ S E F
Sbjct:   17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKL----AASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREESVFQQLETIVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETF 211          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_POLNA (Ribosomal RNA large subunit methyltransferase E OS=Polaromonas naphthalenivorans (strain CJ2) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.198e-23
Identity = 70/200 (35.00%), Postives = 106/200 (53.00%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 818
            D Y ++A++EG+RAR+AFKL ++DE   + +    VVDL + PG+WSQ + RKL  P   +  +  G    I+ +DL PM PIEGV+ +QGD       A+  + +       K DLV+ D AP+++G+   D    + L+   +      +K  G  + K+F G     L    +  F VV   KPK+SR +S E F V
Sbjct:   40 DPYVKQARKEGYRARAAFKLKEMDETLGLIKPGDCVVDLGSTPGAWSQYVRRKL-SPTGAAVGALNG---RIIGLDLLPMEPIEGVVFIQGDFREPEVLAKLEQALSTEKGPVKVDLVISDMAPNLSGIESADAARIAHLVELAVEFAQTRMKPDGALVVKLFHGSGYDDLVKLFQASFKVVKRMKPKASRPNSSETFLV 235          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_CUPTR (Ribosomal RNA large subunit methyltransferase E OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.198e-23
Identity = 76/199 (38.19%), Postives = 103/199 (51.76%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 812
            D Y + A+ EG+RAR+A+KL +IDE+  +    + +VDL AAPGSWSQ    KL      SP +R+G +   +VAIDL PM P+  V  +QGD            VV+    G K DLV+ D AP+++G+   D      L    L      LK  G  + K F G   S +  + K  F VV   KPK+SR+ S E F
Sbjct:   17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKL----ADSPRARDGRIDGAVVAIDLLPMEPVADVTFIQGDFREESVFRELESVVLDASGGNKIDLVLSDMAPNLSGVASADAARIEYLCDLALEFAQAHLKPEGALLVKCFHGSGYSQIVEKFKRQFKVVAKRKPKASRDKSSETF 211          
BLAST of DY258387 vs. ExPASy Swiss-Prot
Match: RLME_CHRSD (Ribosomal RNA large subunit methyltransferase E OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.198e-23
Identity = 62/198 (31.31%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  231 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 824
            D Y +++ ++G+R+R+++KLL++D +  + +    V+DL AAPG WSQ+ + K+            GD   ++A D+  M  + GV  VQGD T     E ++   +G + DLV+ D AP+++G+  +D+     L+   L +    L  GG+F+AK+F+G+       +L+  F  V   KP++SR  S E + + E
Sbjct:   21 DRYVQRSWQDGYRSRASYKLLELDAKDALLKPGMTVIDLGAAPGGWSQIAADKV------------GDKGCVIASDILEMDALAGVTFVQGDFTEMEVLEQILVALEGRRVDLVMSDMAPNMSGMAAIDQPQAMYLVELALDLARQTLSPGGRFLAKVFQGEGFDAYLKELRGSFRKVVTRKPEASRARSREVYLLAE 206          
The following BLAST results are available for this feature:
BLAST of DY258387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RLME_COXBU7.021e-2433.33Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_COXBN7.021e-2433.33Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_COXB27.021e-2433.33Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_METM79.169e-2433.82Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_MAGSA9.169e-2437.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_COXBR9.169e-2433.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RALSO1.198e-2336.18Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_POLNA1.198e-2335.00Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_CUPTR1.198e-2338.19Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_CHRSD1.198e-2331.31Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258387 ID=DY258387; Name=DY258387; organism=Citrus clementina; type=EST; length=1227bp
GAGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCA
GGGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCT
TTCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGT
GCAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTAT
ATCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGC
AAAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAG
ACGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGT
GCTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCC
GGCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGG
CTATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAG
GGTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGA
TGGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTG
GCCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGT
TTAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAA
GATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTAT
TTTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGC
ATAGAGGCATTCGCTGTTTGTGAGATTATTCCCCTCCTGAAGGATTTAAC
CCAAAGATTTGCCCCGCCTTTTGGAAAAAGTGGAAACCCCCTGGGAAGAA
AGGATCCAGATTGCGATAATGGTTGGTTGGAAAGACCAAATAAAGGTTAC
TCCCCCTTTTTACCTGGCGGGGCCCCAAAGGGTATGAATCCCAACCGTTC
CTTACCCCTGCCCAAAGTTGCCGACGGAACCATACAAAACTTGGATTCCC
GCCCCCCCCCCTTTGCCCCCCCTTAAAAAAAAACCCTGGGAAAGAAAAAA
ACCTTCCCCCCCAGGGGTAACCCAAAACCCGAAAAAACCCTCCCTCGGAT
TTTCTTTATTTTTCCCTCCTACTTTTTTCCCTAAAAGGGGGGCCCCCCCC
CCGGGGGGGTTTAAAATTTTTTTTTGG
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