DY258401

Overview
NameDY258401
Unique NameDY258401
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1303
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.310e-11
Identity = 50/192 (26.04%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   67 YFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEM 642
            Y K G+ + A +L D++        ++ +  +I G  KNG  REAID F  + +  +RP+    T+ I    +   +E+AR++++ + + D   D    +ALID + K  S + A  + +R     +D D+  +++++ G    G  +EA  L+  M   G+ P+++  + LL      G + E     N M
Sbjct:  267 YAKCGQVATAKILFDKMKSP----NLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT----LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM 450          
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.323e-11
Identity = 54/205 (26.34%), Postives = 91/205 (44.39%), Query Frame = 1
Query:   55 LMDAYFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEMMGRGLLSGS 669
            L+D Y K G+ S A      V +    V +V +  +I G   NG V EA+  F ++    ++PN     +++ G      +E  R++    +K   I DT    AL+  Y K    ++A      + E+  + D+ A+ S++ G S+ G + EA  LFH M    + P+ +   SL       G++     LH   +  G L+ S
Sbjct:  283 LLDMYVKCGDISNAR----RVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVG-IWDTNVANALVHMYAKCYQNRDA----KYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASS 478          
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.646e-11
Identity = 52/198 (26.26%), Postives = 98/198 (49.49%), Query Frame = 1
Query:   55 LMDAYFKAGEPSEALVLQDEV-LDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKLYERGNMDEAIELHNEM 642
            L+ AY + G+P+EAL++  E+ L   +++  +T    +    + G +         +   G+R N  V +ALI    K   +E++R +F+ + KRD+      ++A+I G   H    EA+++  +M E  V  +   +T++    S  G + EA  LFH+M    GI+P+E     ++  L   G +++A++    M
Sbjct:  335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF----VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAM 528          
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.646e-11
Identity = 55/213 (25.82%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   55 LMDAYFKAGEPSEALVLQDEVLDSI-IEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGL--SRCG-HLQEARVLFHEMIGRGILPDEILCISLL-KKLYERGNMDEAIELHNEMMGRGLLSGS*TY 678
            +M ++++ GE      +  E+ + +     V ++ VL++  C  GL+ EA   +  +   G+  ++  Y  +I GLC    + +A+ LF +M  + +      Y  L++GY K       L +   M   G + D     +LV GL   R G  + EA  +  + +   +      C  LL K+L E G MD A+ +  EM+G+G      TY
Sbjct:  251 MMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKDAVREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQETY 463          
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PTCD1_MOUSE (Pentatricopeptide repeat-containing protein 1 OS=Mus musculus GN=Ptcd1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11
Identity = 49/170 (28.82%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  172 LCKNGLVREAIDYFGR--LPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALI----DGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-ILPDEILCISLLKKLYE-RGNMDEAIELHNEMMGRGL 657
            L K G + EA+D F R  L +  L+P    YT LI G  +   +++A  LF++M KRD+ P    YTAL     +   K  + + AL L+ ++      L+L  Y +L+   ++C  L+    +F E+I RG  + +E  C  L+  + + +    +A+++  +M+  G+
Sbjct:  144 LIKEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLVGCIQDKKTGFRQAMQVWRQMLSLGI 313          
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP379_ARATH (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11
Identity = 47/197 (23.86%), Postives = 85/197 (43.15%), Query Frame = 1
Query:   67 YFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEM-MGRG 654
            Y + G     L +   +  + ++VT    C +++G  K     EA+  +              Y   I+  C+     +A  LFDEM+K+       AY+ ++D Y K     +A+ L  +M + G   ++  Y SL+    R   L+ A  ++ EM    +LPD++   S++        ++  +EL+ E  M RG
Sbjct:  328 YVREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFSKQRGFAEAVKVYEWAMKEECEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRG 524          
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11
Identity = 52/201 (25.87%), Postives = 97/201 (48.26%), Query Frame = 1
Query:   55 LMDAYFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEMMGRGL 657
            ++ +Y K G   +A+ L DE+    ++  +VT+  L+ G    GL ++AI    R+   GL+P+ +  ++L+  + +   ++  + +   +L+  +  D    T LID Y+K      A  + + M       ++ A+ SLV GLS    L++A  L   M   GI PD I   SL       G  ++A+++  +M  +G+
Sbjct:  161 ILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDA----KNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGV 357          
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP287_ARATH (Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11
Identity = 47/192 (24.48%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   55 LMDAYFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIEL 630
            L+ AY +A    EAL + +E+LD+ +  T   + +L+D    +G+V +A   F  +    + P++  YT ++      + +E A   F  +      P+   Y  LI GY K    ++ + +  +M   G+  +    T+++    RC +   A   + EM   G+ PD+     LL     +  ++EA EL
Sbjct:  320 LIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKEL 511          

HSP 2 Score: 68.5514 bits (166), Expect = 9.630e-11
Identity = 41/189 (21.69%), Postives = 87/189 (46.03%), Query Frame = 1
Query:   91 EALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEMMGRGL 657
            E   + D++  S I+  VV++ +LI    +     EA+  F  + D G+RP    Y  L+D       +E+A+ +F  M +  + PD  +YT ++  Y+     + A     R+   G + ++  Y +L+ G ++   +++   ++ +M   GI  ++ +  +++       N   A+  + EM   G+
Sbjct:  297 EVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGV 485          
BLAST of DY258401 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11
Identity = 54/196 (27.55%), Postives = 91/196 (46.43%), Query Frame = 1
Query:   55 LMDAYFKAGEPSEALVLQDEVLDSIIEVTVVTFCVLIDGLCKNGLVREAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKLYERGNMDEAIELHNEM 642
            LMD Y K G   +A      + +S  EV  V+  V++ GL +NG   EAI +F R+   G+  +  V +A++      N +   + L   ++KR    +T     LI+ Y K     ++  +  RM +     +  ++ S++   +R GH   A  L+ EM    + P ++  +SLL      G +D+  EL NEM
Sbjct:  297 LMDMYSKCGSIEDAWT----IFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK----RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEM 484          
The following BLAST results are available for this feature:
BLAST of DY258401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
PP224_ARATH3.310e-1126.04Pentatricopeptide repeat-containing protein At3g12... [more]
PP146_ARATH4.323e-1126.34Pentatricopeptide repeat-containing protein At2g03... [more]
PP175_ARATH5.646e-1126.26Pentatricopeptide repeat-containing protein At2g29... [more]
PP155_ARATH5.646e-1125.82Pentatricopeptide repeat-containing protein At2g15... [more]
PTCD1_MOUSE7.374e-1128.82Pentatricopeptide repeat-containing protein 1 OS=M... [more]
PP379_ARATH7.374e-1123.86Pentatricopeptide repeat-containing protein At5g13... [more]
PP297_ARATH7.374e-1125.87Pentatricopeptide repeat-containing protein At4g01... [more]
PP287_ARATH7.374e-1124.48Pentatricopeptide repeat-containing protein At3g59... [more]
PP215_ARATH7.374e-1127.55Pentatricopeptide repeat-containing protein At3g05... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CC07FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258401 ID=DY258401; Name=DY258401; organism=Citrus clementina; type=EST; length=1303bp
GTTAAGTTACACTATGGACAATGATCTTGCTGTTAATGCTGTCTGCTGCG
CCCTCTCATGGATGCTTATTTTAAGGCTGGAGAACCTTCAGAGGCCCTCG
TGCTGCAAGATGAAGTGTTGGACTCCATAATTGAGGTTACAGTTGTGACA
TTTTGTGTATTAATTGATGGTTTGTGCAAAAATGGACTGGTCCGAGAAGC
AATTGATTATTTTGGTAGGTTGCCAGATTTTGGTTTGCGTCCGAATGTTG
CTGTATATACAGCCCTGATTGATGGTCTTTGTAAGAAAAATTGCATTGAA
AGAGCCAGAAATTTGTTTGATGAAATGCTCAAGAGAGATATGATTCCTGA
TACAACTGCGTACACCGCTCTGATAGATGGATACTTGAAGCATGAAAGTT
TTAAGGAAGCTTTGAATTTGAAAAATAGAATGACTGAAGTTGGTGTGGAT
CTTGATCTGAATGCCTACACTTCCTTAGTTTGGGGGCTTTCTCGATGCGG
TCATCTGCAGGAAGCAAGAGTGTTATTTCATGAGATGATTGGCAGGGGGA
TCCTTCCTGATGAGATTCTATGTATCTCTCTATTAAAGAAGCTTTATGAG
CGAGGAAATATGGATGAAGCAATTGAATTGCACAATGAAATGATGGGAAG
GGGTCTGTTGTCTGGCTCCTAAACTTATGCCCTTCCTATACTACAAACCT
GAGAGTATCCAAAATGTTAATTCCCCTGTAATTTGTTGAGGCTTTACTTT
GAGCCAAAAGTAAGGAACCGGTCCCCCTTCCTGATCAAAAAAATTCTTTT
TTGCCCAATTTACAAGTTCCCTTTTTATATCCTGATTCCACTTGCCGGAA
GGTAATGCCTCTTATCCAATCACCCAATTTCCAATGACCGCCCCCCCCAA
ATTCCCTTTTTCTTCCTTAAATTTGAAAACCCTCCCCTCCCCGGCCCCCC
CCAGGACCTTCCTTGAAAACCCCGGGCCGGGGGTTTTGGGATGGGAAAAA
TTGGAATTAAAACCCCCGTCTCCATTCCAACTCCAACACAACGGGGTAAA
ATCTCCCCCCCCCCCCATGGCAAACATTTTTTAACTCTATCTCGGACCCT
TCTCCCTACCCCCCCCTCCGCGGGAACCCACGCCTCTTTTTTTTTCCCCC
CCCGCCCTCTTTTACCAAAAACGCCGGACAAAACAAATCACCCCCCACAC
CCCCCCTCTCTTTTTTTTTCTCATCCACTGGGATTTTTTTCCCTTTTTTT
CACTCCGCTCCTGGCTCCCTATAACACCACCCCTCCTCGTTGATCATCTC
GAG
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