DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_PHATR (ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum GN=atpB PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.864e-53
Identity = 103/169 (60.95%), Postives = 132/169 (78.11%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G V Q+IG V+D++F EG LPPI +A++++ D +   ++EV Q +G+  VR ++M  T+GL RG   ++ G+PI VPVG  TLGRI NVIGEP+DE+G++K +  LPIHR+APAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:    9 GYVTQIIGPVLDIKFSEGNLPPIYSAIKIILDDNTETIVEVQQLLGDNKVRAVSMRSTDGLKRGVEAIDLGTPINVPVGTPTLGRIFNVIGEPVDEQGEVKYDETLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 177          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_CLONN (ATP synthase subunit beta OS=Clostridium novyi (strain NT) GN=atpD PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.353e-53
Identity = 102/170 (60.00%), Postives = 129/170 (75.88%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G+V QVIG V+D++FD   LP I  A+E+      L+ EV QH+G+ VVRTIAM+ TEGL RG + +NT  PI+VPVG   LGR+ NV+G+ IDE+G+ K E Y PIHR AP F EQ+ E ++  TGIKV+DL+APYQ+GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:    5 NVGRVVQVIGPVIDIKFDSDCLPNIYNAIEIDMGDRILITEVEQHIGDDVVRTIAMESTEGLKRGMKAVNTEKPISVPVGSEILGRLFNVLGKTIDEEGEFKAEEYYPIHRPAPTFEEQSVEPEMFETGIKVIDLIAPYQKGGKIGLFGGAGVGKTVLIQELINNIAKEH 174          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_STIAU (ATP synthase subunit beta OS=Stigmatella aurantiaca GN=atpD PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.297e-53
Identity = 106/173 (61.27%), Postives = 130/173 (75.14%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 782
            ++G++ QV+G V+DV F  G LP + TAL+V + S+      L +EVAQH+GE +VR I+MD TEGL RGQ V NTG+PI VPVG+ TLGRI+NVIGEP+DE+G + +    PIHR AP FV+Q    Q   TGIKV+DLL PY RGGKIGLFGGAGVGKTVL+MELI NVAK
Sbjct:    7 TVGKITQVLGPVIDVEFPPGGLPEVYTALKVTNTSISAEADNLTIEVAQHLGENMVRCISMDSTEGLARGQAVKNTGAPIQVPVGQGTLGRILNVIGEPVDERGPITSSQTWPIHRPAPTFVDQDVRVQAFETGIKVIDLLGPYTRGGKIGLFGGAGVGKTVLLMELIVNVAK 179          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_FERIS (ATP synthase subunit beta OS=Fervidobacterium islandicum GN=atpD PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.297e-53
Identity = 105/174 (60.34%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K S+G++ ++IG VVDV+F EG LP I  AL V++     +L+LEV Q +G+ +VRT+AMD T+GLVRG  V NTG PI  PVGR  LGR+ NVIGEPIDE+G+LK   Y PIHR AP+  EQ TE +IL TG+KV+DLLAP+ +GGKIG FGGAGVGKTVL+ME+I N+A  H
Sbjct:    3 KKSVGKIVRIIGPVVDVKFQEGDLPDIYDALVVINPQTGKKLILEVEQLIGDNIVRTVAMDSTDGLVRGLEVENTGEPIKAPVGRGVLGRMFNVIGEPIDEQGELKDIEYWPIHRPAPSMTEQKTEIEILETGLKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMEMIRNIAIEH 176          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ALKMQ (ATP synthase subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpD PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.297e-53
Identity = 101/171 (59.06%), Postives = 132/171 (77.19%), Query Frame = 3
Query:  279 GSIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++G++ Q+IGAVVD+RF  E +P +L+A+ +      + +EVAQH+G+   R +AM  T+GLVRG   ++TG+PITVPVGR TLGRI NV+GE +DE   ++ + +LPIHREAP+F EQ    +I  TGIKVVDL+APY RGGK+GLFGGAGVGKTVLIMELINN+AK H
Sbjct:    4 GNVGKLVQIIGAVVDIRFSSEEIPALLSAITIQGPDGLVTVEVAQHIGDDTARCVAMRSTDGLVRGMEAIDTGAPITVPVGRETLGRIFNVLGEVVDEGKPVEAKMHLPIHREAPSFEEQEAATEIFETGIKVVDLIAPYARGGKVGLFGGAGVGKTVLIMELINNIAKEH 174          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_CLOB8 (ATP synthase subunit beta OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=atpD PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.084e-52
Identity = 101/171 (59.06%), Postives = 130/171 (76.02%), Query Frame = 3
Query:  279 GSIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G +G+V QVIG V+D++FD + LP +  A+ +      LV EV QH+G+ +VRTIAM  TEGL RG   ++TG+PI+VPVG   LGR+ NV+G+PID+ GD++ +   PIHR AP+F +Q+ E ++  TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:    3 GKMGKVVQVIGPVIDIKFDSDSLPDLYNAIVIKAGDYELVAEVEQHVGDDIVRTIAMSATEGLKRGMDAVDTGAPISVPVGEEVLGRLFNVLGKPIDKCGDIEVKQEYPIHRPAPSFKDQSVEPEMFETGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIQELINNIAKQH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ORITI (ATP synthase subunit beta OS=Orientia tsutsugamushi (strain Ikeda) GN=atpD PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.848e-52
Identity = 100/180 (55.56%), Postives = 139/180 (77.22%), Query Frame = 3
Query:  252 KITDEFTGKGSIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K+  ++  +  +G+V QV+ AVVDV F  + LP IL ALE   ++ ++VLEV QH+G+ +VR +AM+ T+GL RG  V++TG  I VPVG+  LGRI+NV+G+PID+ G +K +++  IH++AP F+ Q+T ++IL+TGIKV+DLL PY  GGKIGLFGGAGVGKTVLIME+INNVAKA+
Sbjct:    2 KLKAKYKQQSKVGKVVQVVSAVVDVSFAGKDLPHILNALECTINNEKIVLEVVQHIGDDIVRCLAMNSTDGLFRGAEVIDTGEQIKVPVGKSILGRILNVVGQPIDDLGPIKCDNFSQIHKDAPKFINQSTSRKILITGIKVIDLLTPYISGGKIGLFGGAGVGKTVLIMEIINNVAKAY 181          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ORITB (ATP synthase subunit beta OS=Orientia tsutsugamushi (strain Boryong) GN=atpD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.414e-52
Identity = 100/180 (55.56%), Postives = 139/180 (77.22%), Query Frame = 3
Query:  252 KITDEFTGKGSIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K+  ++  +  +G+V QV+ AVVDV F  + LP IL ALE   ++ ++VLEV QH+G+ +VR +AM+ T+GL RG  V++TG  I VPVG+  LGRI+NV+G+PID+ G +K +++  IH++AP F+ Q+T ++IL+TGIKV+DLL PY  GGKIGLFGGAGVGKTVLIME+INNVAKA+
Sbjct:    2 KLKAKYKQQSKVGKVVQVVSAVVDVSFAGKDLPHILNALECTINNEKIVLEVLQHIGDDIVRCLAMNSTDGLFRGAEVIDTGEQIKVPVGKSILGRILNVVGQPIDDLGPIKCDNFSQIHKDAPKFINQSTSRKILITGIKVIDLLTPYISGGKIGLFGGAGVGKTVLIMEIINNVAKAY 181          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_DESAP (ATP synthase subunit beta OS=Desulforudis audaxviator (strain MP104C) GN=atpD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.414e-52
Identity = 103/177 (58.19%), Postives = 133/177 (75.14%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-------RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G+V Q+IG VVDVRF  G +P I  AL +    V        L LEVAQH+G  VVRT+AM  T+GLVRG +V++TG+PI VPVGR  LGR+++V+G PID  GD+K E Y PIHR APA V+Q+T+ + L TG+KV+DLL P+ +GGKIG+FGGAGVGKTV++MELINN+AK H
Sbjct:    2 NVGEVVQIIGVVVDVRFPPGQVPEIYNALTIETDKVDAFGRKFNLTLEVAQHLGNNVVRTVAMSTTDGLVRGAKVVDTGAPIKVPVGRPVLGRLIDVLGMPIDGLGDIKAETYYPIHRPAPALVDQSTKVEQLETGLKVIDLLVPFMKGGKIGMFGGAGVGKTVIVMELINNIAKQH 178          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_DESOH (ATP synthase subunit beta OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=atpD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.118e-52
Identity = 103/175 (58.86%), Postives = 133/175 (76.00%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            +IG+V QV+G VVDV F+ G LP ILTAL +      D +  LV+EVAQH+G+ VVRTIAMD T+GLVRG  V +TG+PIT+PVG  +LGR++NV+G+P+D  G +  E  +PIHR AP F EQ T   +L TGIKV+DLL P+ RGGK+GLFGGAGVGKTV++ME++NN+A  H
Sbjct:    4 NIGKVVQVMGPVVDVEFEPGKLPAILTALLITNTVINDEADNLVVEVAQHLGDNVVRTIAMDVTDGLVRGMPVKDTGAPITMPVGAASLGRVLNVVGKPVDGLGPVSREKTMPIHRPAPLFTEQDTSVNVLETGIKVIDLLVPFPRGGKMGLFGGAGVGKTVIMMEMVNNIAMQH 178          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_PHATR4.864e-5360.95ATP synthase subunit beta, chloroplastic OS=Phaeod... [more]
ATPB_CLONN6.353e-5360.00ATP synthase subunit beta OS=Clostridium novyi (st... [more]
ATPB_STIAU8.297e-5361.27ATP synthase subunit beta OS=Stigmatella aurantiac... [more]
ATPB_FERIS8.297e-5360.34ATP synthase subunit beta OS=Fervidobacterium isla... [more]
ATPB_ALKMQ8.297e-5359.06ATP synthase subunit beta OS=Alkaliphilus metallir... [more]
ATPB_CLOB81.084e-5259.06ATP synthase subunit beta OS=Clostridium beijerinc... [more]
ATPB_ORITI1.848e-5255.56ATP synthase subunit beta OS=Orientia tsutsugamush... [more]
ATPB_ORITB2.414e-5255.56ATP synthase subunit beta OS=Orientia tsutsugamush... [more]
ATPB_DESAP2.414e-5258.19ATP synthase subunit beta OS=Desulforudis audaxvia... [more]
ATPB_DESOH4.118e-5258.86ATP synthase subunit beta OS=Desulfococcus oleovor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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