DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_YERP3 (ATP synthase subunit beta OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV   + +LVLEV Q +G GVVR IAM  ++GL RG +V N   PI VPVG+ TLGRIMNV+GEPID KG +  E    IHREAP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIIQVIGAVVDVEFPQDAVPKVYNALEVEGTTEKLVLEVQQQLGGGVVRCIAMGSSDGLSRGLKVTNLEHPIEVPVGKATLGRIMNVLGEPIDMKGPIGEEERWAIHREAPSYEELASSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_SCHSP (ATP synthase subunit beta, chloroplastic OS=Schisandra sphenanthera GN=atpB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/175 (56.00%), Postives = 125/175 (71.43%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G++ Q+IG V+DV F  G +P I  +L V     V   + +   V Q +G   VR +AM  T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   19 TLGRITQIIGPVLDVAFPPGKMPNINNSLXVKGRDTVGQQINVTCXVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGSTLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_SACD2 (ATP synthase subunit beta OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 96/170 (56.47%), Postives = 123/170 (72.35%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G++ Q+IGAV+DV F  + +P +  AL V D    L LEV Q +G+GVVR IAM G+EG+ RG  V NTG+PI VPVG  TLGRIM+V+G PIDEKG +       IHR+AP + E A  +++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+A  H
Sbjct:    2 SSGRIVQIIGAVIDVEFPRDSVPKVYDALTVADKG--LTLEVQQQLGDGVVRAIAMGGSEGVSRGLAVENTGAPINVPVGTATLGRIMDVLGNPIDEKGPINETERASIHRKAPKYDELAASEELLATGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIATEH 169          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_PROMH (ATP synthase subunit beta OS=Proteus mirabilis (strain HI4320) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 95/168 (56.55%), Postives = 125/168 (74.40%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVD  F  + +P +  ALEV++   +LVLEV Q +G G+VR IAM  ++GL RG +V + G PI VPVG+ TLGRIMNV+G PID KG+++TE    IHREAP + E +  Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIVQVIGAVVDAEFPQDSVPKVYDALEVMNGKEKLVLEVQQQLGGGIVRCIAMGTSDGLSRGLKVEDLGHPIEVPVGKATLGRIMNVLGTPIDMKGEIETEERWSIHREAPTYEELSNSQELLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_PINKO (ATP synthase subunit beta, chloroplastic OS=Pinus koraiensis GN=atpB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/175 (56.00%), Postives = 123/175 (70.29%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G + Q+IG V+DV F  G +P I  +L+V         +++  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G +      PIHR APAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   17 NVGYIAQIIGPVLDVSFSPGYMPNIYNSLKVQGQGTAGQEIQVTCEVQQLLGNHKVRAVAMSATDGLTRGMTVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDARITSPIHRTAPAFTELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 191          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_OLIPU (ATP synthase subunit beta, chloroplastic OS=Olimarabidopsis pumila GN=atpB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 99/177 (55.93%), Postives = 125/177 (70.62%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K ++G++ Q+IG V+DV F  G +P I  AL V     +   + +  EV Q +G   VR +AM  TEGL RG  V++ G+P++VPVG  TLGRI NV+GEP+D  G + T    PIH+ APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   17 KKNLGRISQIIGPVLDVAFPPGKMPNIYNALVVKGRDTLGQEINVTCEVQQLLGNNRVRAVAMSATEGLKRGMDVVDMGNPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_NITOC (ATP synthase subunit beta OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/170 (57.65%), Postives = 125/170 (73.53%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G+  Q+IGAVVDV F  E +P +  AL + D  V L LEV Q +G+GVVRTIAM G++GL RG  V NTG+PI+VPVG  TLGRIM+V+GEP+DE G +  E    IHR+APA+ E +   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    2 STGKTVQIIGAVVDVEFPRESIPKVYHALRIDD--VGLTLEVQQQLGDGVVRTIAMGGSDGLRRGMAVTNTGAPISVPVGTKTLGRIMDVLGEPVDEAGPVGEEERWSIHRKAPAYEELSPATELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEH 169          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_LEGPL (ATP synthase subunit beta OS=Legionella pneumophila (strain Lens) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/170 (57.65%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S+G V +VIGAVVDV F  + +P +  AL++VD    LV EV Q +G+GVVRTIAM  T+GL RG +  NTG PI VPVG+ TLGRIM+V+G P+D+ G +  E    IHR+AP++ EQA  Q++L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    2 SLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSD--LVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 169          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_LEGPH (ATP synthase subunit beta OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/170 (57.65%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S+G V +VIGAVVDV F  + +P +  AL++VD    LV EV Q +G+GVVRTIAM  T+GL RG +  NTG PI VPVG+ TLGRIM+V+G P+D+ G +  E    IHR+AP++ EQA  Q++L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    2 SLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSD--LVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 169          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_LEGPC (ATP synthase subunit beta OS=Legionella pneumophila (strain Corby) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 98/170 (57.65%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S+G V +VIGAVVDV F  + +P +  AL++VD    LV EV Q +G+GVVRTIAM  T+GL RG +  NTG PI VPVG+ TLGRIM+V+G P+D+ G +  E    IHR+AP++ EQA  Q++L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    2 SLGTVVEVIGAVVDVEFPRDSVPKVNDALKLVDSD--LVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 169          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_YERP31.790e-4758.33ATP synthase subunit beta OS=Yersinia pseudotuberc... [more]
ATPB_SCHSP1.790e-4756.00ATP synthase subunit beta, chloroplastic OS=Schisa... [more]
ATPB_SACD21.790e-4756.47ATP synthase subunit beta OS=Saccharophagus degrad... [more]
ATPB_PROMH1.790e-4756.55ATP synthase subunit beta OS=Proteus mirabilis (st... [more]
ATPB_PINKO1.790e-4756.00ATP synthase subunit beta, chloroplastic OS=Pinus ... [more]
ATPB_OLIPU1.790e-4755.93ATP synthase subunit beta, chloroplastic OS=Olimar... [more]
ATPB_NITOC1.790e-4757.65ATP synthase subunit beta OS=Nitrosococcus oceani ... [more]
ATPB_LEGPL1.790e-4757.65ATP synthase subunit beta OS=Legionella pneumophil... [more]
ATPB_LEGPH1.790e-4757.65ATP synthase subunit beta OS=Legionella pneumophil... [more]
ATPB_LEGPC1.790e-4757.65ATP synthase subunit beta OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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