DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_FRATF (ATP synthase subunit beta OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 100/170 (58.82%), Postives = 124/170 (72.94%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G++ QVIGAV+DV F  +  P +  AL VV+    LVLEV Q +G+GVVRTIAM  ++GL RG  V NT +PI+VPVG  TLGRIMNV+GEPIDE G ++      IH+  PA+ E A   +IL TGIKVVDL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AK H
Sbjct:    2 STGKIIQVIGAVIDVEFARDNTPKVYDALNVVEAG--LVLEVQQQIGDGVVRTIAMGSSDGLRRGMEVKNTNAPISVPVGHGTLGRIMNVLGEPIDEAGPIEYTEKRSIHQAPPAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEH 169          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_FRAT1 (ATP synthase subunit beta OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 100/170 (58.82%), Postives = 124/170 (72.94%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G++ QVIGAV+DV F  +  P +  AL VV+    LVLEV Q +G+GVVRTIAM  ++GL RG  V NT +PI+VPVG  TLGRIMNV+GEPIDE G ++      IH+  PA+ E A   +IL TGIKVVDL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AK H
Sbjct:    2 STGKIIQVIGAVIDVEFARDNTPKVYDALNVVEAG--LVLEVQQQIGDGVVRTIAMGSSDGLRRGMEVKNTNAPISVPVGHGTLGRIMNVLGEPIDEAGPIEYTEKRSIHQAPPAYDELALSTEILETGIKVVDLICPFAKGGKVGLFGGAGVGKTVTMMELINNIAKEH 169          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ENTS8 (ATP synthase subunit beta OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 96/168 (57.14%), Postives = 125/168 (74.40%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV F  + +P +  ALEV + + RLVLEV Q +G G+VRTIAM  ++GL RG  V +   PI VPVG+ TLGRIMNV+G+PID KGD+  E    IHR AP++ E ++ Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    4 GKIVQVIGAVVDVEFPQDAVPKVYDALEVTNGNERLVLEVQQQLGGGIVRTIAMGSSDGLRRGLPVADLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 171          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_CUSRE (ATP synthase subunit beta, plastid OS=Cuscuta reflexa GN=atpB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 101/175 (57.71%), Postives = 124/175 (70.86%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS---VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K + G + Q+IG V+DV F  G +P I  AL V       + +  EV Q +G   VR +AM+ T+GL+RG  V++TG+PITVPVG  TLGRI NV+GEP+D  G + T     IHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   17 KKNRGHIVQIIGPVLDVAFPPGKMPNIYNALIVKGRDTEQMNVTCEVQQLLGNNRVRAVAMNDTDGLMRGMEVIDTGTPITVPVGGSTLGRIFNVLGEPVDNLGPVDTNTTFTIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 191          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_CAPBU (ATP synthase subunit beta, chloroplastic OS=Capsella bursa-pastoris GN=atpB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 99/177 (55.93%), Postives = 124/177 (70.06%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K ++G++ Q+IG V+DV F  G +P I  AL V     +   + +  EV Q +G   VR +AM  TEGL RG  V++ G P++VPVG  TLGRI NV+GEP+D  G + T    PIH+ APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   17 KKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTLGQEINVTCEVQQLLGNNRVRAVAMSATEGLKRGMDVVDMGKPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_ANOFW (ATP synthase subunit beta OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.790e-47
Identity = 104/177 (58.76%), Postives = 130/177 (73.45%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVR--------LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLP-IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G+V QV+G VVDV+F++G LP I  AL++  H  R        L LEVA H+G+  VRTIAM  T+GLVRG  V++TG+PI+VPVG VTLGR+ NV+GEPID   ++  +     IHR AP F + +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+A+ H
Sbjct:    4 GRVIQVMGPVVDVKFEDGHLPAIYNALKI-KHKARNEKEVDIDLTLEVALHLGDDTVRTIAMSTTDGLVRGMEVIDTGAPISVPVGEVTLGRVFNVLGEPIDLGEEIPADARRDAIHRPAPKFEQLSTQVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEH 179          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_TOLAT (ATP synthase subunit beta OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.338e-47
Identity = 99/172 (57.56%), Postives = 128/172 (74.42%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G + QVIGAVVDV+F  + +P +  AL++V    S  LV+EV Q +G GVVR IAM  ++GL RG  V NTG  I VPVG  TLGRIMNV+GEP+DE+G +  E    IHREAP++ +Q++  ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELINN+AKAH
Sbjct:    2 SNGIIVQVIGAVVDVQFPQDAVPKVYDALKIVSEGQSKGLVMEVQQQIGGGVVRCIAMGTSDGLRRGAEVSNTGEAIKVPVGMKTLGRIMNVLGEPVDEQGPIGAEDNWVIHREAPSYEDQSSATELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_PSECV (ATP synthase subunit beta, chloroplastic OS=Pseudogaltonia clavata GN=atpB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.338e-47
Identity = 99/175 (56.57%), Postives = 123/175 (70.29%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G++ Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  T+GL RG  V++T +P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  TE  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELI N+AKAH
Sbjct:   19 NVGRIAQIIGPVLDVVFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTRAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTELSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIYNIAKAH 193          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_METCA (ATP synthase subunit beta OS=Methylococcus capsulatus GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.338e-47
Identity = 99/170 (58.24%), Postives = 126/170 (74.12%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G++ Q+IGAVVD  F  E LP I  AL V +  V LVLEV Q +G+GVVR IAM  T+G+ RG  V NTG+PI+VPVG  TLGRIMNV+G+PIDEKG +  +    IHR+AP++ +QA   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:    2 SSGKIVQIIGAVVDAEFPRESLPKIYDALRVDE--VGLVLEVQQQLGDGVVRCIAMGSTDGVRRGVTVTNTGAPISVPVGTETLGRIMNVLGDPIDEKGPIGEKERWGIHRKAPSYQDQAAANELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 169          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_GOSHI (ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum GN=atpB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.338e-47
Identity = 98/177 (55.37%), Postives = 124/177 (70.06%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K ++G++ Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM  T+GL RG  V++TG+ ++VPVG  TLGRI NV+GEP+D  G + T    PIH+ APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   17 KENLGRISQIIGPVLDVAFPPGKMPNIYNALVVKGQDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_FRATF1.790e-4758.82ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_FRAT11.790e-4758.82ATP synthase subunit beta OS=Francisella tularensi... [more]
ATPB_ENTS81.790e-4757.14ATP synthase subunit beta OS=Enterobacter sakazaki... [more]
ATPB_CUSRE1.790e-4757.71ATP synthase subunit beta, plastid OS=Cuscuta refl... [more]
ATPB_CAPBU1.790e-4755.93ATP synthase subunit beta, chloroplastic OS=Capsel... [more]
ATPB_ANOFW1.790e-4758.76ATP synthase subunit beta OS=Anoxybacillus flavith... [more]
ATPB_TOLAT2.338e-4757.56ATP synthase subunit beta OS=Tolumonas auensis (st... [more]
ATPB_PSECV2.338e-4756.57ATP synthase subunit beta, chloroplastic OS=Pseudo... [more]
ATPB_METCA2.338e-4758.24ATP synthase subunit beta OS=Methylococcus capsula... [more]
ATPB_GOSHI2.338e-4755.37ATP synthase subunit beta, chloroplastic OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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