DY258404

Overview
NameDY258404
Unique NameDY258404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_BARHE (ATP synthase subunit beta OS=Bartonella henselae GN=atpD PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.365e-60
Identity = 117/171 (68.42%), Postives = 139/171 (81.29%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            + ++G + QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GLVRGQ+V +TG+ I+VPVG  TLGRIMNVIGEP+D  G + T     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   54 EAAVGVIKQVIGAVVDVQFEGPLPNILNALETDNLGNRLVLEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQISVPVGEATLGRIMNVIGEPVDNVGPIATSKTRSIHQEAPEYVEQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELINNIAKAH 224          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_SCHPO (ATP synthase subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=atp2 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.007e-60
Identity = 121/174 (69.54%), Postives = 141/174 (81.03%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEG--LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            K + G + QVIGAVVD +F++   LP IL ALEV +  + RLVLEVAQH+GE  VRTIAMDGTEGLVRG  V++TGSPI++PVG  TLGRIMNVIGEP+DE+G +K   Y PIH +AP+F EQ+T  +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAH
Sbjct:   51 KHNKGSIKQVIGAVVDCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAH 224          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_RHILO (ATP synthase subunit beta OS=Rhizobium loti GN=atpD PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.152e-60
Identity = 118/170 (69.41%), Postives = 137/170 (80.59%), Query Frame = 3
Query:  279 GSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G +G+V QVIGAVVDV+F + LP IL ALE  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PITVPVG   LGRI+NVIGEP+DE+G +       IH+ AP +VEQ+TE QIL+TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AKAH
Sbjct:    7 GVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCIAMDSTEGLVRGQEVRDTGAPITVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAPTYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKAH 176          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_KLULA (ATP synthase subunit beta, mitochondrial OS=Kluyveromyces lactis GN=ATP2 PE=3 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 9.152e-60
Identity = 118/170 (69.41%), Postives = 140/170 (82.35%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            S G+V  VIGA+VDV+F++G LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGLVRG+ V +TG+PI+VPVGR TLGRI+NVIGEPIDE+G + ++   PIH + P FVEQ+T  ++L TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAH
Sbjct:   36 SQGKVRAVIGAIVDVQFEQGQLPAILNALEIDTPEGKLVLEVAQHLGENTVRTIAMDGTEGLVRGENVSDTGAPISVPVGRETLGRIINVIGEPIDERGPINSKMRKPIHADPPLFVEQSTAAEVLETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAH 205          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSM (ATP synthase subunit beta OS=Magnetococcus sp. (strain MC-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.561e-59
Identity = 116/167 (69.46%), Postives = 134/167 (80.24%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G+V QV+G VVDVRF+  LP IL AL +V +  RLVLEVA HMGEG VR IAMD T+G+VRG  V +TG  I VPVGR TLGRI+NV+GEP DEKG ++T   LPIHR APAF +QAT  +IL TGIKV+DLLAPY +GGK+GLFGGAGVGKTVLIMELINNVA+ H
Sbjct:    7 GKVVQVVGPVVDVRFEGELPNILNALHMVRNGERLVLEVATHMGEGTVRAIAMDSTDGVVRGMEVTDTGDTIRVPVGRQTLGRILNVVGEPQDEKGPVETTETLPIHRPAPAFAQQATSAEILETGIKVIDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAQEH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_BARQU (ATP synthase subunit beta OS=Bartonella quintana GN=atpD PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.039e-59
Identity = 115/171 (67.25%), Postives = 138/171 (80.70%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            KG++G++ QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GL RGQ+V +T + I VPVG  TLGRIMNVIGEP+D  G + T     IH++AP +V+Q+T  +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   59 KGAVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLTRGQKVFDTETQICVPVGEATLGRIMNVIGEPVDNVGPIATTKTRSIHQKAPEYVDQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELINNIAKAH 229          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSL (ATP synthase subunit beta OS=Geobacter sulfurreducens GN=atpD PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.542e-59
Identity = 119/175 (68.00%), Postives = 136/175 (77.71%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            + G++ QVIGAV+DV F+ G LPPI  AL V      D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ VL+TG  I+VPVGR TLGRI+NVIGEP+DE G +  E    IHREAPAFV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    4 NFGKISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENAVRTIAMDSTDGLVRGQAVLDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHREAPAFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQH 178          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_PARDP (ATP synthase subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=atpD PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.932e-59
Identity = 115/167 (68.86%), Postives = 133/167 (79.64%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV+FD  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PI VPVG  TLGRI+NV+GEP+DE G ++      IH++AP F  QAT  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:    6 GKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGLPVKDTGGPIMVPVGDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAAQATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 172          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSA (ATP synthase subunit beta OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpD PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.932e-59
Identity = 114/169 (67.46%), Postives = 138/169 (81.66%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            ++G + QV+GAVVDVRFD  LP IL+AL +     +LVLEVAQH+GE  VRTIAMD T+GL RG  V++TG+ I +PVG  TLGRI+NVIGEPIDE+G +  +  LPIH +AP FV+Q+TE +ILVTGIKV+DLLAPY +GGKIGL GGAGVGKTVLIMELINN+AKAH
Sbjct:    5 NVGTITQVLGAVVDVRFDGQLPAILSALHLEHQGKKLVLEVAQHLGESTVRTIAMDSTDGLTRGTEVVDTGAAIQMPVGPETLGRIINVIGEPIDERGPIGNKTTLPIHADAPEFVDQSTETEILVTGIKVIDLLAPYCKGGKIGLCGGAGVGKTVLIMELINNIAKAH 173          
BLAST of DY258404 vs. ExPASy Swiss-Prot
Match: ATPB_SPHAL (ATP synthase subunit beta OS=Sphingopyxis alaskensis GN=atpD PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.012e-58
Identity = 114/167 (68.26%), Postives = 136/167 (81.44%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 788
            G++ QVIGAVVDV+F   LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD T+GL RGQ V +TG+ I+VPVG  TLGRI+NVIGEPIDE+G + ++   PIH +AP FV+Q+TE  ILVTGIKV+DL+APY +GGKIGLFGGAGVGKTVLI ELINN+AK H
Sbjct:   41 GRIAQVIGAVVDVQFTGELPAILNALETDNNGNRLVLEVAQHLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQTLGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEASILVTGIKVIDLIAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGH 207          
The following BLAST results are available for this feature:
BLAST of DY258404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BARHE5.365e-6068.42ATP synthase subunit beta OS=Bartonella henselae G... [more]
ATPB_SCHPO7.007e-6069.54ATP synthase subunit beta, mitochondrial OS=Schizo... [more]
ATPB_RHILO9.152e-6069.41ATP synthase subunit beta OS=Rhizobium loti GN=atp... [more]
ATPB_KLULA9.152e-6069.41ATP synthase subunit beta, mitochondrial OS=Kluyve... [more]
ATPB_MAGSM1.561e-5969.46ATP synthase subunit beta OS=Magnetococcus sp. (st... [more]
ATPB_BARQU2.039e-5967.25ATP synthase subunit beta OS=Bartonella quintana G... [more]
ATPB_GEOSL4.542e-5968.00ATP synthase subunit beta OS=Geobacter sulfurreduc... [more]
ATPB_PARDP5.932e-5968.86ATP synthase subunit beta OS=Paracoccus denitrific... [more]
ATPB_MAGSA5.932e-5967.46ATP synthase subunit beta OS=Magnetospirillum magn... [more]
ATPB_SPHAL1.012e-5868.26ATP synthase subunit beta OS=Sphingopyxis alaskens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258404 ID=DY258404; Name=DY258404; organism=Citrus clementina; type=EST; length=790bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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